Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV12a10r
(611 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0110 - 866728-866952,867035-867193,867315-867448,868225-86... 179 1e-45
03_05_0108 - 20887146-20887370,20887460-20887618,20887930-208880... 177 7e-45
06_03_0711 + 23798998-23799106,23799838-23799957,23800181-238003... 29 3.8
02_01_0754 - 5595813-5595887,5595973-5596071,5596136-5596327,559... 29 3.8
12_01_0564 - 4567650-4568063,4568154-4568624,4568722-4568923,457... 28 5.1
01_01_1166 + 9287840-9288040,9289752-9289799,9292166-9292282,929... 28 5.1
10_08_0694 - 19929918-19930292,19930633-19930866 28 6.7
11_03_0171 + 11111534-11113207 27 8.9
02_04_0147 + 20194244-20195717,20195953-20195969 27 8.9
01_06_1481 - 37675793-37677325 27 8.9
>06_01_0110 -
866728-866952,867035-867193,867315-867448,868225-868333
Length = 208
Score = 179 bits (436), Expect = 1e-45
Identities = 92/190 (48%), Positives = 125/190 (65%), Gaps = 2/190 (1%)
Frame = -2
Query: 610 FHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXPLRPIVRCPTVRYHTKVRAG 431
F K WQ +VKTWFNQPAR+ RR+ R PLRPIV+C T++Y+ K RAG
Sbjct: 13 FKKHWQNYVKTWFNQPARKQRRRIARQKKAVKIFPRPTSGPLRPIVQCQTLKYNMKSRAG 72
Query: 430 RGFTLREIRAAGLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKEYRARLILFP-KGKK 254
RGFTL E++AAG+ FA TIGI+VD RR+N+S+E LQ NVQR+K Y+A+L++FP + +K
Sbjct: 73 RGFTLEELKAAGIPKKFAPTIGISVDHRRKNRSLEGLQANVQRLKTYKAKLVIFPRRARK 132
Query: 253 VLKGEANEEERKLATQLRGPLMPVQQPAPKSV-ARPITEDEKNFKAYQYLRGARSIAKLV 77
V G++ EE ATQ++G MP+ + +SV +T+D K FKAY LR R + +
Sbjct: 133 VKAGDSTPEELATATQVQGDYMPITRGEKRSVEVVKVTDDMKAFKAYAKLRVERMNQRHI 192
Query: 76 GIRAKRLKDA 47
G R KR +A
Sbjct: 193 GARQKRAAEA 202
>03_05_0108 -
20887146-20887370,20887460-20887618,20887930-20888063,
20888597-20888705
Length = 208
Score = 177 bits (430), Expect = 7e-45
Identities = 91/190 (47%), Positives = 125/190 (65%), Gaps = 2/190 (1%)
Frame = -2
Query: 610 FHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXPLRPIVRCPTVRYHTKVRAG 431
F K WQ +VKTWFNQPAR+ RR+ R PLRPIV+C T++Y+ K RAG
Sbjct: 13 FKKHWQNYVKTWFNQPARKQRRRIARQKKAVKIFPRPTSGPLRPIVQCQTLKYNMKSRAG 72
Query: 430 RGFTLREIRAAGLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKEYRARLILFP-KGKK 254
RGFTL E++AAG+ +A TIGI+VD RR+N+S+E LQ NVQR+K Y+A+L++FP + +K
Sbjct: 73 RGFTLEELKAAGIPKKYAPTIGISVDHRRKNRSLEGLQANVQRLKTYKAKLVIFPRRARK 132
Query: 253 VLKGEANEEERKLATQLRGPLMPVQQPAPKSV-ARPITEDEKNFKAYQYLRGARSIAKLV 77
V G++ EE ATQ++G MP+ + +SV +T++ K FKAY LR R + V
Sbjct: 133 VKAGDSTAEELATATQVQGDYMPIARGEKRSVEVVKVTDEMKAFKAYAKLRVERMNQRHV 192
Query: 76 GIRAKRLKDA 47
G R KR +A
Sbjct: 193 GARQKRAAEA 202
>06_03_0711 +
23798998-23799106,23799838-23799957,23800181-23800317,
23800418-23800579,23800707-23800793,23800872-23800958,
23801317-23801454,23802023-23802214,23802287-23802385,
23802490-23802564
Length = 401
Score = 28.7 bits (61), Expect = 3.8
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +1
Query: 352 DLQQFQSFGQILGSILRP 405
DL+ QS GQI+G +LRP
Sbjct: 54 DLKSLQSVGQIIGEVLRP 71
>02_01_0754 -
5595813-5595887,5595973-5596071,5596136-5596327,
5596992-5597129,5597415-5597501,5597583-5597669,
5597795-5597956,5598089-5598225,5598483-5598602,
5600668-5600773
Length = 400
Score = 28.7 bits (61), Expect = 3.8
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +1
Query: 352 DLQQFQSFGQILGSILRP 405
DL+ QS GQI+G +LRP
Sbjct: 53 DLKSLQSVGQIIGEVLRP 70
>12_01_0564 -
4567650-4568063,4568154-4568624,4568722-4568923,
4570395-4571104
Length = 598
Score = 28.3 bits (60), Expect = 5.1
Identities = 18/57 (31%), Positives = 31/57 (54%)
Frame = -3
Query: 570 TSQLDDTAESKIE*RKLRP*LHVLQLGRYVL*CDAQLFGTILKYAPVEDSLFVKLGP 400
T +L + S++ ++L L++ LG + D + L Y PVEDSLF+++ P
Sbjct: 343 TMELHERVYSEMAMKRLLDNLNIKVLGNTTV--DRLPIFSFLIYPPVEDSLFLRVEP 397
>01_01_1166 +
9287840-9288040,9289752-9289799,9292166-9292282,
9293018-9293700,9295214-9297190,9298330-9298441,
9299848-9299904
Length = 1064
Score = 28.3 bits (60), Expect = 5.1
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = -2
Query: 331 VESLQINVQRIKEYRARLILFPKGKKVLKGEANEEERKLATQL 203
++SL+ VQR+ E R R +L P G ++E R A +
Sbjct: 182 IQSLRTRVQRVSERRLRYMLNPTGSLSSSNYIDQERRLSALNI 224
>10_08_0694 - 19929918-19930292,19930633-19930866
Length = 202
Score = 27.9 bits (59), Expect = 6.7
Identities = 14/57 (24%), Positives = 28/57 (49%)
Frame = -2
Query: 346 RRNKSVESLQINVQRIKEYRARLILFPKGKKVLKGEANEEERKLATQLRGPLMPVQQ 176
R N + + + + K LI+ P G +VL+G E++ K A ++ L +++
Sbjct: 54 RSNPVHKKIPVLLHHGKPIAESLIIIPPGIRVLRGSVEEDKDKAAGEMSTALQHLEE 110
>11_03_0171 + 11111534-11113207
Length = 557
Score = 27.5 bits (58), Expect = 8.9
Identities = 24/108 (22%), Positives = 40/108 (37%), Gaps = 3/108 (2%)
Frame = -2
Query: 439 RAGRGFTLREIRAAGLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKE---YRARLILF 269
+ G+G + + G PV R +G R K + + R++ R R +
Sbjct: 436 KGGKGIVYKVVVGNGTTPVAVRRLGGGAAAAERYKEFAAEAGAIGRVRHPNVVRLRAYYW 495
Query: 268 PKGKKVLKGEANEEERKLATQLRGPLMPVQQPAPKSVARPITEDEKNF 125
+K++ + LAT LRG P P+P + E F
Sbjct: 496 SADEKLVVTDF-VNNGNLATALRGEHTPSPSPSPSQFVNLFGKRETYF 542
>02_04_0147 + 20194244-20195717,20195953-20195969
Length = 496
Score = 27.5 bits (58), Expect = 8.9
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = +2
Query: 476 YRT*RPSCRTWSYGLSF 526
Y T RP CR W + LSF
Sbjct: 264 YHTARPGCRYWVFSLSF 280
>01_06_1481 - 37675793-37677325
Length = 510
Score = 27.5 bits (58), Expect = 8.9
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = +3
Query: 9 AVGAFVTSSGFSAASFNLLARIP 77
+ GAFVT G+++AS + AR+P
Sbjct: 363 STGAFVTHCGWNSASEGITARVP 385
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,665,505
Number of Sequences: 37544
Number of extensions: 312626
Number of successful extensions: 846
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 826
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 841
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1466594128
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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