Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV12a10r
(611 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g49010.2 68416.m05354 60S ribosomal protein L13 (RPL13B) / br... 167 5e-42
At3g49010.1 68416.m05353 60S ribosomal protein L13 (RPL13B) / br... 167 5e-42
At5g23900.1 68418.m02807 60S ribosomal protein L13 (RPL13D) 167 7e-42
At3g48960.1 68416.m05348 60S ribosomal protein L13 (RPL13C) 60S ... 147 6e-36
At5g47070.1 68418.m05800 protein kinase, putative similar to pro... 32 0.26
At3g02660.1 68416.m00257 tRNA synthetase class I (W and Y) famil... 32 0.34
At2g02060.1 68415.m00141 calcium-dependent protein kinase-relate... 29 1.8
At1g62250.2 68414.m07023 expressed protein 29 2.4
At1g62250.1 68414.m07022 expressed protein 29 2.4
At5g43010.1 68418.m05245 26S proteasome AAA-ATPase subunit (RPT4... 29 3.2
At1g45000.1 68414.m05158 26S proteasome regulatory complex subun... 29 3.2
At1g33880.1 68414.m04200 avirulence-responsive family protein / ... 29 3.2
At5g65110.1 68418.m08191 acyl-CoA oxidase (ACX2) identical to ac... 28 5.6
At5g12280.1 68418.m01444 hypothetical protein 27 7.4
At5g24320.2 68418.m02866 WD-40 repeat family protein contains Pf... 27 9.8
At5g24320.1 68418.m02865 WD-40 repeat family protein contains Pf... 27 9.8
At5g20940.1 68418.m02488 glycosyl hydrolase family 3 protein bet... 27 9.8
At2g37260.1 68415.m04571 WRKY family transcription factor (TTG2)... 27 9.8
>At3g49010.2 68416.m05354 60S ribosomal protein L13 (RPL13B) /
breast basic conserved protein 1-related (BBC1)
Length = 206
Score = 167 bits (406), Expect = 5e-42
Identities = 84/189 (44%), Positives = 120/189 (63%), Gaps = 1/189 (0%)
Frame = -2
Query: 610 FHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXPLRPIVRCPTVRYHTKVRAG 431
F K WQ +VKTWFNQPAR+ RR+ R PLRP+V T++Y+ KVR G
Sbjct: 12 FKKHWQNYVKTWFNQPARKTRRRIARQKKAVKIFPRPTSGPLRPVVHGQTLKYNMKVRTG 71
Query: 430 RGFTLREIRAAGLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKEYRARLILFP-KGKK 254
+GFTL E++AAG+ A TIGIAVD RR+N+S+E LQ NVQR+K Y+ +L++FP + +K
Sbjct: 72 KGFTLEELKAAGIPKKLAPTIGIAVDHRRKNRSLEGLQTNVQRLKTYKTKLVIFPRRARK 131
Query: 253 VLKGEANEEERKLATQLRGPLMPVQQPAPKSVARPITEDEKNFKAYQYLRGARSIAKLVG 74
V G++ EE ATQ++G +P+ + P +T + K+FKA+ +R R+ + G
Sbjct: 132 VKAGDSTPEELANATQVQGDYLPIVREKPTMELVKLTSEMKSFKAFDKIRLERTNKRHAG 191
Query: 73 IRAKRLKDA 47
RAKR +A
Sbjct: 192 ARAKRAAEA 200
>At3g49010.1 68416.m05353 60S ribosomal protein L13 (RPL13B) /
breast basic conserved protein 1-related (BBC1)
Length = 206
Score = 167 bits (406), Expect = 5e-42
Identities = 84/189 (44%), Positives = 120/189 (63%), Gaps = 1/189 (0%)
Frame = -2
Query: 610 FHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXPLRPIVRCPTVRYHTKVRAG 431
F K WQ +VKTWFNQPAR+ RR+ R PLRP+V T++Y+ KVR G
Sbjct: 12 FKKHWQNYVKTWFNQPARKTRRRIARQKKAVKIFPRPTSGPLRPVVHGQTLKYNMKVRTG 71
Query: 430 RGFTLREIRAAGLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKEYRARLILFP-KGKK 254
+GFTL E++AAG+ A TIGIAVD RR+N+S+E LQ NVQR+K Y+ +L++FP + +K
Sbjct: 72 KGFTLEELKAAGIPKKLAPTIGIAVDHRRKNRSLEGLQTNVQRLKTYKTKLVIFPRRARK 131
Query: 253 VLKGEANEEERKLATQLRGPLMPVQQPAPKSVARPITEDEKNFKAYQYLRGARSIAKLVG 74
V G++ EE ATQ++G +P+ + P +T + K+FKA+ +R R+ + G
Sbjct: 132 VKAGDSTPEELANATQVQGDYLPIVREKPTMELVKLTSEMKSFKAFDKIRLERTNKRHAG 191
Query: 73 IRAKRLKDA 47
RAKR +A
Sbjct: 192 ARAKRAAEA 200
>At5g23900.1 68418.m02807 60S ribosomal protein L13 (RPL13D)
Length = 206
Score = 167 bits (405), Expect = 7e-42
Identities = 86/189 (45%), Positives = 119/189 (62%), Gaps = 1/189 (0%)
Frame = -2
Query: 610 FHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXPLRPIVRCPTVRYHTKVRAG 431
F K WQ +VKTWFNQPAR+ RR+ R PLRP+V T++Y+ KVRAG
Sbjct: 12 FRKHWQNYVKTWFNQPARKTRRRVARQKKAVKIFPRPTSGPLRPVVHGQTLKYNMKVRAG 71
Query: 430 RGFTLREIRAAGLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKEYRARLILFP-KGKK 254
+GFTL E++ AG+ A TIGI+VD RR+N+S+E LQ NVQR+K Y+A+L++FP + ++
Sbjct: 72 KGFTLEELKVAGIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRSRQ 131
Query: 253 VLKGEANEEERKLATQLRGPLMPVQQPAPKSVARPITEDEKNFKAYQYLRGARSIAKLVG 74
V G++ EE ATQ++G MP+ +T D K FKAY +R R+ A+ G
Sbjct: 132 VKAGDSTPEELANATQVQGDYMPIASVKAAMELVKLTADLKAFKAYDKIRLERTNARHAG 191
Query: 73 IRAKRLKDA 47
RAKR +A
Sbjct: 192 ARAKRAAEA 200
>At3g48960.1 68416.m05348 60S ribosomal protein L13 (RPL13C) 60S
ribosomal protein L13 (BBC1), Arabidopsis thaliana,
gb:X75162
Length = 206
Score = 147 bits (356), Expect = 6e-36
Identities = 77/189 (40%), Positives = 114/189 (60%), Gaps = 1/189 (0%)
Frame = -2
Query: 610 FHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXPLRPIVRCPTVRYHTKVRAG 431
F K W+ +VKT FNQPA + RR+ R P+RP+V T+ Y+ KVRAG
Sbjct: 12 FKKKWENYVKTSFNQPAMKTRRRIARQNKAVKIFPRPTAGPIRPVVHAQTLTYNMKVRAG 71
Query: 430 RGFTLREIRAAGLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKEYRARLILFPKGKKV 251
+GFTL E++AAG+ A TIGI+VD R+N+S+E Q NVQR+K Y+A+L++FP+ +
Sbjct: 72 KGFTLEELKAAGIPKKLAPTIGISVDHHRKNRSLEGFQTNVQRLKTYKAKLVIFPRCART 131
Query: 250 LK-GEANEEERKLATQLRGPLMPVQQPAPKSVARPITEDEKNFKAYQYLRGARSIAKLVG 74
+K G++ ++E ATQ++ MP+ + P +T D K F AY +R + G
Sbjct: 132 VKVGDSAQQELANATQVQVDHMPIVREMPTMELVKLTSDMKLFNAYDKIRLEGINKRHAG 191
Query: 73 IRAKRLKDA 47
+RAKR +A
Sbjct: 192 VRAKRAAEA 200
>At5g47070.1 68418.m05800 protein kinase, putative similar to
protein kinase [Lophopyrum elongatum]
gi|13022177|gb|AAK11674
Length = 410
Score = 32.3 bits (70), Expect = 0.26
Identities = 16/52 (30%), Positives = 26/52 (50%)
Frame = -2
Query: 265 KGKKVLKGEANEEERKLATQLRGPLMPVQQPAPKSVARPITEDEKNFKAYQY 110
KGK++L+ A E + T P P+P+S+ TE E+N + + Y
Sbjct: 25 KGKELLQNSAPELTNRSETSSFNLQTPRSLPSPRSIKDLYTEREQNLRVFSY 76
>At3g02660.1 68416.m00257 tRNA synthetase class I (W and Y) family
protein similar to SP|P00952 Tyrosyl-tRNA synthetase (EC
6.1.1.1) (Tyrosine--tRNA ligase) (TyrRS) {Bacillus
stearothermophilus}; contains Pfam profiles PF00579:
tRNA synthetases class I (W and Y), PF01479: S4 domain
Length = 511
Score = 31.9 bits (69), Expect = 0.34
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = +3
Query: 372 VRANTGFNPAALISRRVNPLPARTLVWYRTVGHRTIGRNGPAAGR 506
+R GF+P A N L L W++ GH+ +G G A GR
Sbjct: 115 LRVYCGFDPTAESLHLGNLLGIIVLSWFQRCGHQAVGLIGGATGR 159
>At2g02060.1 68415.m00141 calcium-dependent protein kinase-related /
CDPK-related contains TIGRFAM TIGR01557: myb-like
DNA-binding domain, SHAQKYF class; contains Pfam
PF00249: Myb-like DNA-binding domain; similar to CDPK
substrate protein 1; CSP1 (GI:6942190) [Mesembryanthemum
crystallinum].
Length = 626
Score = 29.5 bits (63), Expect = 1.8
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = +3
Query: 510 ATALAFFILFCFLRYRRAGWLNQV 581
A L FFI FCF YR +G+L V
Sbjct: 266 AVLLLFFICFCFSLYRTSGYLRIV 289
>At1g62250.2 68414.m07023 expressed protein
Length = 223
Score = 29.1 bits (62), Expect = 2.4
Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Frame = -2
Query: 457 RYHTKVRAGRGFTLREIRAAGLNPVFARTIGIA-VDPRRRNKSVESLQINVQRIKEY 290
RY T + G G TL+E +AG+N A +G D R+ +++ + ++R++ Y
Sbjct: 98 RYRTVIGRGEGETLKEFISAGVN---AYALGCTDEDLRKELMAMKDSGLEIERMENY 151
>At1g62250.1 68414.m07022 expressed protein
Length = 267
Score = 29.1 bits (62), Expect = 2.4
Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Frame = -2
Query: 457 RYHTKVRAGRGFTLREIRAAGLNPVFARTIGIA-VDPRRRNKSVESLQINVQRIKEY 290
RY T + G G TL+E +AG+N A +G D R+ +++ + ++R++ Y
Sbjct: 98 RYRTVIGRGEGETLKEFISAGVN---AYALGCTDEDLRKELMAMKDSGLEIERMENY 151
>At5g43010.1 68418.m05245 26S proteasome AAA-ATPase subunit (RPT4a)
gb|AAF22524.1
Length = 399
Score = 28.7 bits (61), Expect = 3.2
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +1
Query: 352 DLQQFQSFGQILGSILRP 405
DL+ QS GQI+G +LRP
Sbjct: 52 DLKSLQSVGQIIGEVLRP 69
>At1g45000.1 68414.m05158 26S proteasome regulatory complex subunit
p42D, putative similar to 26S proteasome regulatory
complex subunit p42D [Drosophila melanogaster]
gi|6434958|gb|AAF08391
Length = 399
Score = 28.7 bits (61), Expect = 3.2
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +1
Query: 352 DLQQFQSFGQILGSILRP 405
DL+ QS GQI+G +LRP
Sbjct: 52 DLKSLQSVGQIIGEVLRP 69
>At1g33880.1 68414.m04200 avirulence-responsive family protein /
avirulence induced gene (AIG1) family protein similar to
AIG1 protein SP:P54120 [Arabidopsis thaliana]; contains
Pfam PF04548: AIG1 family;
Length = 234
Score = 28.7 bits (61), Expect = 3.2
Identities = 16/53 (30%), Positives = 26/53 (49%)
Frame = -2
Query: 295 EYRARLILFPKGKKVLKGEANEEERKLATQLRGPLMPVQQPAPKSVARPITED 137
E+ R++ F G+KVL +E A Q+ + V + K+ +P TED
Sbjct: 165 EFLMRVLRFCNGRKVLFNNMTNDEGVKAEQVNQVMAHVAAISKKNDEKPYTED 217
>At5g65110.1 68418.m08191 acyl-CoA oxidase (ACX2) identical to
acyl-CoA oxidase [Arabidopsis thaliana] GI:3044212
Length = 692
Score = 27.9 bits (59), Expect = 5.6
Identities = 13/22 (59%), Positives = 15/22 (68%)
Frame = -2
Query: 67 AKRLKDAAENPDDVTKAPTAKE 2
AK L DA E PD VT+AP A +
Sbjct: 658 AKELVDAFELPDHVTRAPIAMQ 679
>At5g12280.1 68418.m01444 hypothetical protein
Length = 419
Score = 27.5 bits (58), Expect = 7.4
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = -2
Query: 334 SVESLQINVQRIKEYRARLILFPKGKKVLKGEA 236
+V+SL NV +KE + I FP K+ L+G+A
Sbjct: 362 TVQSLSENVASLKEKISGEIQFPTNKQKLRGKA 394
>At5g24320.2 68418.m02866 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 698
Score = 27.1 bits (57), Expect = 9.8
Identities = 22/76 (28%), Positives = 33/76 (43%)
Frame = +2
Query: 380 KYWVQSCGPNFTKSESSTGAYFSMVPNSWASHYRT*RPSCRTWSYGLSFLYSILLSAVSS 559
+Y + S + T E + FS V SHY+ R SCR S S L+ +++
Sbjct: 624 EYVLDSPKGSATWPEEKLASSFSPVKAIRRSHYKFLRSSCRRTSES-SHLWGLVIVTGGW 682
Query: 560 SWLVKPSFNKSLPILV 607
+K N LP+ V
Sbjct: 683 DGRIKLFHNYGLPVPV 698
>At5g24320.1 68418.m02865 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 694
Score = 27.1 bits (57), Expect = 9.8
Identities = 22/76 (28%), Positives = 33/76 (43%)
Frame = +2
Query: 380 KYWVQSCGPNFTKSESSTGAYFSMVPNSWASHYRT*RPSCRTWSYGLSFLYSILLSAVSS 559
+Y + S + T E + FS V SHY+ R SCR S S L+ +++
Sbjct: 620 EYVLDSPKGSATWPEEKLASSFSPVKAIRRSHYKFLRSSCRRTSES-SHLWGLVIVTGGW 678
Query: 560 SWLVKPSFNKSLPILV 607
+K N LP+ V
Sbjct: 679 DGRIKLFHNYGLPVPV 694
>At5g20940.1 68418.m02488 glycosyl hydrolase family 3 protein
beta-glucosidase, common nasturtium, PIR:T10521
Length = 626
Score = 27.1 bits (57), Expect = 9.8
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -2
Query: 421 TLREIRAAGLNPVFARTIGIAVDPR 347
T E+RA G+ VFA I + DPR
Sbjct: 158 TALEVRATGIQYVFAPCIAVCRDPR 182
>At2g37260.1 68415.m04571 WRKY family transcription factor (TTG2)
contains Pfam profile: PF03106 WRKY DNA -binding domain
Length = 349
Score = 27.1 bits (57), Expect = 9.8
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = +2
Query: 353 IYSNSNRSGKYWVQSCGPNFTKSESSTGAYFSMVPNSWASH 475
+ ++R+G VQ P+FT+SE+STG S+ +W +
Sbjct: 54 VSQGTHRAGPNLVQKV-PSFTESETSTGDRSSVDGYNWRKY 93
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,617,661
Number of Sequences: 28952
Number of extensions: 250371
Number of successful extensions: 682
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 653
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 672
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1226538000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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