Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12a10f
         (553 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC664.05 |rpl13||60S ribosomal protein L13|Schizosaccharomyces...   159   3e-40
SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pomb...    28   0.80 
SPAC2F3.12c |||conserved eukaryotic protein|Schizosaccharomyces ...    25   5.6  
SPAC23C4.02 |crn1||actin binding protein, coronin Crn1|Schizosac...    25   5.6  
SPCC1322.14c |vtc4||vacuolar transporter chaperone |Schizosaccha...    25   7.4  
SPBC14C8.06 |arc1|sop2|ARP2/3 actin-organizing complex subunit S...    25   9.8  
SPCC962.03c |cut15||karyopherin Cut15|Schizosaccharomyces pombe|...    25   9.8  

>SPAC664.05 |rpl13||60S ribosomal protein L13|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 208

 Score =  159 bits (386), Expect = 3e-40
 Identities = 84/163 (51%), Positives = 108/163 (66%), Gaps = 1/163 (0%)
 Frame = +2

Query: 68  IPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRCPTVRYHT 247
           +PN HFHKDWQR+VKTWFNQP R+ RR+Q R               +RP V+ PT+RY+ 
Sbjct: 9   LPNAHFHKDWQRYVKTWFNQPGRKLRRRQAR-QTKAAKIAPRPVEAIRPAVKPPTIRYNM 67

Query: 248 KVRAGRGFTLREIRAAGLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKEYRARLILFP 427
           KVRAGRGFTL E++AAG++   A TIGI VD RRRN+S ESLQ NV+RIK Y A LI+FP
Sbjct: 68  KVRAGRGFTLEELKAAGVSRRVASTIGIPVDHRRRNRSEESLQRNVERIKVYLAHLIVFP 127

Query: 428 -KGKKVLKGEANEEERKLATQLRGPLMPVQQPAPKSVARPITE 553
            K  +  KG+A +      T +   ++P+ Q A +  A+PITE
Sbjct: 128 RKAGQPKKGDATDVSGAEQTDV-AAVLPITQEAVEE-AKPITE 168


>SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1283

 Score = 28.3 bits (60), Expect = 0.80
 Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 4/44 (9%)
 Frame = -1

Query: 280  TKSESSTGAYFSM----VPNSWASHYRT*RPSCRTWSYGLSFLY 161
            T   +STG+Y  M    +   W S   T    C TWSY  S+ Y
Sbjct: 1215 TVQGTSTGSYICMPHFQIQYDWCSAGVTDMSECNTWSYQKSYDY 1258


>SPAC2F3.12c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 279

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +3

Query: 261 VEDSLFVKLGPQD*TQYLPERLELL 335
           +ED+LF +L   D T Y  +RLE+L
Sbjct: 95  LEDALFSQLDEFDDTAYREQRLEML 119


>SPAC23C4.02 |crn1||actin binding protein, coronin
           Crn1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 10/35 (28%), Positives = 19/35 (54%)
 Frame = +2

Query: 446 KGEANEEERKLATQLRGPLMPVQQPAPKSVARPIT 550
           + E N ++ +  TQ +    PV++  PK  + P+T
Sbjct: 470 RDEDNHQKEETVTQPKREKTPVEKSFPKPASSPVT 504


>SPCC1322.14c |vtc4||vacuolar transporter chaperone
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 721

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +3

Query: 72  LMDISTRIGKDLLKLGLTSQLDDTAES 152
           L+DIS R G+D     L S+L D  +S
Sbjct: 556 LLDISKRKGRDSFVAALNSRLKDIKDS 582


>SPBC14C8.06 |arc1|sop2|ARP2/3 actin-organizing complex subunit
           Sop2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 377

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = -2

Query: 297 PAALISRRVNPLPARTLVW 241
           P ALI+ +++ LP R+L+W
Sbjct: 241 PRALITVKLSQLPLRSLLW 259


>SPCC962.03c |cut15||karyopherin Cut15|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 542

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
 Frame = +3

Query: 18  LCRGKTPTSKW--ARGII*YLMDISTRIGKDLL--KLGLTSQLDDTAESKIE 161
           +CRGK P   W     +I  L  +   + +D+L   L   S L D A  KI+
Sbjct: 233 MCRGKNPQPDWNSISQVIPVLSKLIYTLDEDVLVDALWAISYLSDGANEKIQ 284


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,280,109
Number of Sequences: 5004
Number of extensions: 46702
Number of successful extensions: 126
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 229961028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)