Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12a10f
         (553 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88308-7|AAB42322.1|  207|Caenorhabditis elegans Ribosomal prote...   171   2e-43
U88308-8|AAO61436.1|   88|Caenorhabditis elegans Ribosomal prote...    94   5e-20
Z82083-6|CAB04974.1|  388|Caenorhabditis elegans Hypothetical pr...    29   2.9  
U41535-2|AAB63402.1|  731|Caenorhabditis elegans Hypothetical pr...    27   6.8  
U41535-1|AAK67247.1|  734|Caenorhabditis elegans Hypothetical pr...    27   6.8  
U13876-13|AAA21172.3|  370|Caenorhabditis elegans Prion-like-(q/...    27   9.0  

>U88308-7|AAB42322.1|  207|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 13, isoform a protein.
          Length = 207

 Score =  171 bits (417), Expect = 2e-43
 Identities = 81/168 (48%), Positives = 110/168 (65%), Gaps = 1/168 (0%)
 Frame = +2

Query: 53  KGNNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRCPT 232
           +GN M+ N HF K W + +KTWF+QPAR+ RR+QNR               LR +VRCP 
Sbjct: 4   RGNQMLGNAHFRKHWHKRIKTWFDQPARKLRRRQNRQAKAVEIAPRPVAGLLRSVVRCPQ 63

Query: 233 VRYHTKVRAGRGFTLREIRAAGLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKEYRAR 412
            RY+TK R GRGF+L+E++AAG++   ARTIGIAVD RR NK+ E L+ N  R+KEY+A+
Sbjct: 64  KRYNTKTRLGRGFSLQELKAAGISQAQARTIGIAVDVRRTNKTAEGLKANADRLKEYKAK 123

Query: 413 LILFP-KGKKVLKGEANEEERKLATQLRGPLMPVQQPAPKSVARPITE 553
           LILFP K     KG+++ EE K+A QLRG ++P+         R +T+
Sbjct: 124 LILFPKKASAPKKGDSSAEELKVAAQLRGDVLPLSHTITFDEPRQVTD 171


>U88308-8|AAO61436.1|   88|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 13, isoform b protein.
          Length = 88

 Score = 94.3 bits (224), Expect = 5e-20
 Identities = 41/84 (48%), Positives = 54/84 (64%)
 Frame = +2

Query: 53  KGNNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRCPT 232
           +GN M+ N HF K W + +KTWF+QPAR+ RR+QNR               LR +VRCP 
Sbjct: 4   RGNQMLGNAHFRKHWHKRIKTWFDQPARKLRRRQNRQAKAVEIAPRPVAGLLRSVVRCPQ 63

Query: 233 VRYHTKVRAGRGFTLREIRAAGLN 304
            RY+TK R GRGF+L+E++AA  N
Sbjct: 64  KRYNTKTRLGRGFSLQELKAAEEN 87


>Z82083-6|CAB04974.1|  388|Caenorhabditis elegans Hypothetical
           protein ZK1010.8 protein.
          Length = 388

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 14/32 (43%), Positives = 23/32 (71%), Gaps = 2/32 (6%)
 Frame = -2

Query: 189 RGAT-ALAFF-ILFCFLRYRRAGWLNQVLTNL 100
           RGAT A+A + I++CF+++   GW  QV+ N+
Sbjct: 9   RGATIAIAVWNIIYCFIQFGILGWQFQVVKNI 40


>U41535-2|AAB63402.1|  731|Caenorhabditis elegans Hypothetical
           protein F18A1.6a protein.
          Length = 731

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +2

Query: 431 GKKVLKGEANEEERKLATQLRGPLMPVQQPAP 526
           GK +     NEE+R+LA  LR  +     PAP
Sbjct: 206 GKLLASKYPNEEDRELAEYLRDKIASTSTPAP 237


>U41535-1|AAK67247.1|  734|Caenorhabditis elegans Hypothetical
           protein F18A1.6b protein.
          Length = 734

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +2

Query: 431 GKKVLKGEANEEERKLATQLRGPLMPVQQPAP 526
           GK +     NEE+R+LA  LR  +     PAP
Sbjct: 209 GKLLASKYPNEEDRELAEYLRDKIASTSTPAP 240


>U13876-13|AAA21172.3|  370|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 46
           protein.
          Length = 370

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +2

Query: 455 ANEEERKLATQLRGPLMPVQQPAPKSVARP 544
           A + ++++  Q++ P  PVQQP P  +  P
Sbjct: 102 AQQPQQQVQQQVQQPQQPVQQPQPTPIRPP 131


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,529,195
Number of Sequences: 27780
Number of extensions: 258807
Number of successful extensions: 661
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 635
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 658
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1123720628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)