Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV12a10f
(553 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g49010.2 68416.m05354 60S ribosomal protein L13 (RPL13B) / br... 165 1e-41
At3g49010.1 68416.m05353 60S ribosomal protein L13 (RPL13B) / br... 165 1e-41
At5g23900.1 68418.m02807 60S ribosomal protein L13 (RPL13D) 159 9e-40
At3g48960.1 68416.m05348 60S ribosomal protein L13 (RPL13C) 60S ... 148 2e-36
At3g02660.1 68416.m00257 tRNA synthetase class I (W and Y) famil... 32 0.29
At2g02060.1 68415.m00141 calcium-dependent protein kinase-relate... 29 1.6
At1g62250.2 68414.m07023 expressed protein 29 2.1
At1g62250.1 68414.m07022 expressed protein 29 2.1
At5g43010.1 68418.m05245 26S proteasome AAA-ATPase subunit (RPT4... 29 2.7
At1g45000.1 68414.m05158 26S proteasome regulatory complex subun... 29 2.7
At5g64410.1 68418.m08091 oligopeptide transporter OPT family pro... 27 6.3
At5g12280.1 68418.m01444 hypothetical protein 27 6.3
At5g24320.2 68418.m02866 WD-40 repeat family protein contains Pf... 27 8.3
At5g24320.1 68418.m02865 WD-40 repeat family protein contains Pf... 27 8.3
At5g20940.1 68418.m02488 glycosyl hydrolase family 3 protein bet... 27 8.3
At2g37260.1 68415.m04571 WRKY family transcription factor (TTG2)... 27 8.3
>At3g49010.2 68416.m05354 60S ribosomal protein L13 (RPL13B) /
breast basic conserved protein 1-related (BBC1)
Length = 206
Score = 165 bits (402), Expect = 1e-41
Identities = 78/159 (49%), Positives = 107/159 (67%), Gaps = 1/159 (0%)
Frame = +2
Query: 53 KGNNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRCPT 232
K NN+IPNGHF K WQ +VKTWFNQPAR+ RR+ R LRP+V T
Sbjct: 2 KHNNVIPNGHFKKHWQNYVKTWFNQPARKTRRRIARQKKAVKIFPRPTSGPLRPVVHGQT 61
Query: 233 VRYHTKVRAGRGFTLREIRAAGLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKEYRAR 412
++Y+ KVR G+GFTL E++AAG+ A TIGIAVD RR+N+S+E LQ NVQR+K Y+ +
Sbjct: 62 LKYNMKVRTGKGFTLEELKAAGIPKKLAPTIGIAVDHRRKNRSLEGLQTNVQRLKTYKTK 121
Query: 413 LILFP-KGKKVLKGEANEEERKLATQLRGPLMPVQQPAP 526
L++FP + +KV G++ EE ATQ++G +P+ + P
Sbjct: 122 LVIFPRRARKVKAGDSTPEELANATQVQGDYLPIVREKP 160
>At3g49010.1 68416.m05353 60S ribosomal protein L13 (RPL13B) /
breast basic conserved protein 1-related (BBC1)
Length = 206
Score = 165 bits (402), Expect = 1e-41
Identities = 78/159 (49%), Positives = 107/159 (67%), Gaps = 1/159 (0%)
Frame = +2
Query: 53 KGNNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRCPT 232
K NN+IPNGHF K WQ +VKTWFNQPAR+ RR+ R LRP+V T
Sbjct: 2 KHNNVIPNGHFKKHWQNYVKTWFNQPARKTRRRIARQKKAVKIFPRPTSGPLRPVVHGQT 61
Query: 233 VRYHTKVRAGRGFTLREIRAAGLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKEYRAR 412
++Y+ KVR G+GFTL E++AAG+ A TIGIAVD RR+N+S+E LQ NVQR+K Y+ +
Sbjct: 62 LKYNMKVRTGKGFTLEELKAAGIPKKLAPTIGIAVDHRRKNRSLEGLQTNVQRLKTYKTK 121
Query: 413 LILFP-KGKKVLKGEANEEERKLATQLRGPLMPVQQPAP 526
L++FP + +KV G++ EE ATQ++G +P+ + P
Sbjct: 122 LVIFPRRARKVKAGDSTPEELANATQVQGDYLPIVREKP 160
>At5g23900.1 68418.m02807 60S ribosomal protein L13 (RPL13D)
Length = 206
Score = 159 bits (387), Expect = 9e-40
Identities = 75/154 (48%), Positives = 105/154 (68%), Gaps = 1/154 (0%)
Frame = +2
Query: 53 KGNNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRCPT 232
K NN+IP+ HF K WQ +VKTWFNQPAR+ RR+ R LRP+V T
Sbjct: 2 KHNNVIPSSHFRKHWQNYVKTWFNQPARKTRRRVARQKKAVKIFPRPTSGPLRPVVHGQT 61
Query: 233 VRYHTKVRAGRGFTLREIRAAGLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKEYRAR 412
++Y+ KVRAG+GFTL E++ AG+ A TIGI+VD RR+N+S+E LQ NVQR+K Y+A+
Sbjct: 62 LKYNMKVRAGKGFTLEELKVAGIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKAK 121
Query: 413 LILFP-KGKKVLKGEANEEERKLATQLRGPLMPV 511
L++FP + ++V G++ EE ATQ++G MP+
Sbjct: 122 LVVFPRRSRQVKAGDSTPEELANATQVQGDYMPI 155
>At3g48960.1 68416.m05348 60S ribosomal protein L13 (RPL13C) 60S
ribosomal protein L13 (BBC1), Arabidopsis thaliana,
gb:X75162
Length = 206
Score = 148 bits (359), Expect = 2e-36
Identities = 71/159 (44%), Positives = 104/159 (65%), Gaps = 1/159 (0%)
Frame = +2
Query: 53 KGNNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRCPT 232
K NN+IPNGHF K W+ +VKT FNQPA + RR+ R +RP+V T
Sbjct: 2 KHNNVIPNGHFKKKWENYVKTSFNQPAMKTRRRIARQNKAVKIFPRPTAGPIRPVVHAQT 61
Query: 233 VRYHTKVRAGRGFTLREIRAAGLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKEYRAR 412
+ Y+ KVRAG+GFTL E++AAG+ A TIGI+VD R+N+S+E Q NVQR+K Y+A+
Sbjct: 62 LTYNMKVRAGKGFTLEELKAAGIPKKLAPTIGISVDHHRKNRSLEGFQTNVQRLKTYKAK 121
Query: 413 LILFPKGKKVLK-GEANEEERKLATQLRGPLMPVQQPAP 526
L++FP+ + +K G++ ++E ATQ++ MP+ + P
Sbjct: 122 LVIFPRCARTVKVGDSAQQELANATQVQVDHMPIVREMP 160
>At3g02660.1 68416.m00257 tRNA synthetase class I (W and Y) family
protein similar to SP|P00952 Tyrosyl-tRNA synthetase (EC
6.1.1.1) (Tyrosine--tRNA ligase) (TyrRS) {Bacillus
stearothermophilus}; contains Pfam profiles PF00579:
tRNA synthetases class I (W and Y), PF01479: S4 domain
Length = 511
Score = 31.9 bits (69), Expect = 0.29
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = -2
Query: 321 VRANTGFNPAALISRRVNPLPARTLVWYRTVGHRTIGRNGPAAGR 187
+R GF+P A N L L W++ GH+ +G G A GR
Sbjct: 115 LRVYCGFDPTAESLHLGNLLGIIVLSWFQRCGHQAVGLIGGATGR 159
>At2g02060.1 68415.m00141 calcium-dependent protein kinase-related /
CDPK-related contains TIGRFAM TIGR01557: myb-like
DNA-binding domain, SHAQKYF class; contains Pfam
PF00249: Myb-like DNA-binding domain; similar to CDPK
substrate protein 1; CSP1 (GI:6942190) [Mesembryanthemum
crystallinum].
Length = 626
Score = 29.5 bits (63), Expect = 1.6
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = -2
Query: 183 ATALAFFILFCFLRYRRAGWLNQV 112
A L FFI FCF YR +G+L V
Sbjct: 266 AVLLLFFICFCFSLYRTSGYLRIV 289
>At1g62250.2 68414.m07023 expressed protein
Length = 223
Score = 29.1 bits (62), Expect = 2.1
Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Frame = +2
Query: 236 RYHTKVRAGRGFTLREIRAAGLNPVFARTIGIA-VDPRRRNKSVESLQINVQRIKEY 403
RY T + G G TL+E +AG+N A +G D R+ +++ + ++R++ Y
Sbjct: 98 RYRTVIGRGEGETLKEFISAGVN---AYALGCTDEDLRKELMAMKDSGLEIERMENY 151
>At1g62250.1 68414.m07022 expressed protein
Length = 267
Score = 29.1 bits (62), Expect = 2.1
Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Frame = +2
Query: 236 RYHTKVRAGRGFTLREIRAAGLNPVFARTIGIA-VDPRRRNKSVESLQINVQRIKEY 403
RY T + G G TL+E +AG+N A +G D R+ +++ + ++R++ Y
Sbjct: 98 RYRTVIGRGEGETLKEFISAGVN---AYALGCTDEDLRKELMAMKDSGLEIERMENY 151
>At5g43010.1 68418.m05245 26S proteasome AAA-ATPase subunit (RPT4a)
gb|AAF22524.1
Length = 399
Score = 28.7 bits (61), Expect = 2.7
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = -3
Query: 341 DLQQFQSFGQILGSILRP 288
DL+ QS GQI+G +LRP
Sbjct: 52 DLKSLQSVGQIIGEVLRP 69
>At1g45000.1 68414.m05158 26S proteasome regulatory complex subunit
p42D, putative similar to 26S proteasome regulatory
complex subunit p42D [Drosophila melanogaster]
gi|6434958|gb|AAF08391
Length = 399
Score = 28.7 bits (61), Expect = 2.7
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = -3
Query: 341 DLQQFQSFGQILGSILRP 288
DL+ QS GQI+G +LRP
Sbjct: 52 DLKSLQSVGQIIGEVLRP 69
>At5g64410.1 68418.m08091 oligopeptide transporter OPT family
protein similar to SP|P40900 Sexual differentiation
process protein isp4 {Schizosaccharomyces pombe};
contains Pfam profile PF03169: OPT oligopeptide
transporter protein
Length = 729
Score = 27.5 bits (58), Expect = 6.3
Identities = 16/63 (25%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Frame = -1
Query: 202 PSCRTWSYGLSFLYSILLSAVSSSWLVKPSFNKSLPILV-EMSIRYHIIPLAHFDVGVLP 26
P+ W++ + FL L+S S+L + ++ P+++ +++++ +P+ HF VLP
Sbjct: 28 PTLPVWTFRMWFLG--LISCSLLSFLNQFFSYRTEPLVITQITVQVATLPIGHFLAKVLP 85
Query: 25 RQR 17
+ R
Sbjct: 86 KTR 88
>At5g12280.1 68418.m01444 hypothetical protein
Length = 419
Score = 27.5 bits (58), Expect = 6.3
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = +2
Query: 359 SVESLQINVQRIKEYRARLILFPKGKKVLKGEA 457
+V+SL NV +KE + I FP K+ L+G+A
Sbjct: 362 TVQSLSENVASLKEKISGEIQFPTNKQKLRGKA 394
>At5g24320.2 68418.m02866 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 698
Score = 27.1 bits (57), Expect = 8.3
Identities = 22/76 (28%), Positives = 33/76 (43%)
Frame = -1
Query: 313 KYWVQSCGPNFTKSESSTGAYFSMVPNSWASHYRT*RPSCRTWSYGLSFLYSILLSAVSS 134
+Y + S + T E + FS V SHY+ R SCR S S L+ +++
Sbjct: 624 EYVLDSPKGSATWPEEKLASSFSPVKAIRRSHYKFLRSSCRRTSES-SHLWGLVIVTGGW 682
Query: 133 SWLVKPSFNKSLPILV 86
+K N LP+ V
Sbjct: 683 DGRIKLFHNYGLPVPV 698
>At5g24320.1 68418.m02865 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 694
Score = 27.1 bits (57), Expect = 8.3
Identities = 22/76 (28%), Positives = 33/76 (43%)
Frame = -1
Query: 313 KYWVQSCGPNFTKSESSTGAYFSMVPNSWASHYRT*RPSCRTWSYGLSFLYSILLSAVSS 134
+Y + S + T E + FS V SHY+ R SCR S S L+ +++
Sbjct: 620 EYVLDSPKGSATWPEEKLASSFSPVKAIRRSHYKFLRSSCRRTSES-SHLWGLVIVTGGW 678
Query: 133 SWLVKPSFNKSLPILV 86
+K N LP+ V
Sbjct: 679 DGRIKLFHNYGLPVPV 694
>At5g20940.1 68418.m02488 glycosyl hydrolase family 3 protein
beta-glucosidase, common nasturtium, PIR:T10521
Length = 626
Score = 27.1 bits (57), Expect = 8.3
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +2
Query: 272 TLREIRAAGLNPVFARTIGIAVDPR 346
T E+RA G+ VFA I + DPR
Sbjct: 158 TALEVRATGIQYVFAPCIAVCRDPR 182
>At2g37260.1 68415.m04571 WRKY family transcription factor (TTG2)
contains Pfam profile: PF03106 WRKY DNA -binding domain
Length = 349
Score = 27.1 bits (57), Expect = 8.3
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = -1
Query: 340 IYSNSNRSGKYWVQSCGPNFTKSESSTGAYFSMVPNSWASH 218
+ ++R+G VQ P+FT+SE+STG S+ +W +
Sbjct: 54 VSQGTHRAGPNLVQKV-PSFTESETSTGDRSSVDGYNWRKY 93
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,881,662
Number of Sequences: 28952
Number of extensions: 242853
Number of successful extensions: 635
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 612
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 626
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1043173136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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