Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV12a09r
(725 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006797-1|AAF60743.1| 1079|Caenorhabditis elegans Hypothetical ... 31 1.1
Z75714-12|CAB00066.1| 368|Caenorhabditis elegans Hypothetical p... 30 1.9
AL033508-5|CAA22057.1| 368|Caenorhabditis elegans Hypothetical ... 30 1.9
AF067617-5|AAC17559.1| 2957|Caenorhabditis elegans Temporarily a... 29 2.6
AC024776-1|AAK68468.1| 338|Caenorhabditis elegans Hypothetical ... 29 3.4
U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical p... 29 4.5
AC024876-6|AAS80337.1| 181|Caenorhabditis elegans Hypothetical ... 29 4.5
U80438-4|AAB37634.2| 1415|Caenorhabditis elegans Uncoordinated p... 28 5.9
U70618-1|AAB17088.1| 1415|Caenorhabditis elegans unc-40 protein. 28 5.9
Z30974-5|CAH19087.1| 3183|Caenorhabditis elegans Hypothetical pr... 28 7.8
Z30974-4|CAA83226.2| 3767|Caenorhabditis elegans Hypothetical pr... 28 7.8
Z30423-15|CAH19103.1| 3183|Caenorhabditis elegans Hypothetical p... 28 7.8
Z30423-14|CAC42345.1| 3767|Caenorhabditis elegans Hypothetical p... 28 7.8
AL110484-7|CAB54398.1| 286|Caenorhabditis elegans Hypothetical ... 28 7.8
AF139060-1|AAD29428.1| 3767|Caenorhabditis elegans transmembrane... 28 7.8
>AC006797-1|AAF60743.1| 1079|Caenorhabditis elegans Hypothetical
protein Y51B11A.1 protein.
Length = 1079
Score = 30.7 bits (66), Expect = 1.1
Identities = 30/119 (25%), Positives = 46/119 (38%), Gaps = 1/119 (0%)
Frame = +3
Query: 363 PSSLVASRRPSAGTTDTSKQLSCSPGSPSTS-PKPQTFPDSGRSSLADKATGEMKSVGWT 539
PS+LV S P++ +T + + +P + ST P T P ++ A + T T
Sbjct: 57 PSTLVLSSTPTSSSTPIKETTTTAPETTSTEPPSSSTTPVQTTTTTAPETTSTEAPSSST 116
Query: 540 SLLMLTRPMVSEGCRRTALVSVTRDGLITTTRP*RTQMKTDILEAASGAEDPARVNEGT 716
+ + T E S T TTT T +T EA S + P + T
Sbjct: 117 TPVQTTTTTAPETTSTEPPSSSTSPVQTTTT----TAPETTSTEAPSSSTTPVQTTTTT 171
>Z75714-12|CAB00066.1| 368|Caenorhabditis elegans Hypothetical
protein Y106G6G.1 protein.
Length = 368
Score = 29.9 bits (64), Expect = 1.9
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = -2
Query: 553 SINRDVQ-PTDFISPVALSASEDLPESGNVCGFGEV 449
++N +V P + I PVA +S LPE+G V G E+
Sbjct: 301 NVNGEVTAPEEKIDPVARDSSHALPENGEVTGNSEI 336
>AL033508-5|CAA22057.1| 368|Caenorhabditis elegans Hypothetical
protein Y106G6G.1 protein.
Length = 368
Score = 29.9 bits (64), Expect = 1.9
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = -2
Query: 553 SINRDVQ-PTDFISPVALSASEDLPESGNVCGFGEV 449
++N +V P + I PVA +S LPE+G V G E+
Sbjct: 301 NVNGEVTAPEEKIDPVARDSSHALPENGEVTGNSEI 336
>AF067617-5|AAC17559.1| 2957|Caenorhabditis elegans Temporarily
assigned gene nameprotein 192 protein.
Length = 2957
Score = 29.5 bits (63), Expect = 2.6
Identities = 27/92 (29%), Positives = 40/92 (43%), Gaps = 5/92 (5%)
Frame = +3
Query: 342 TSYLEVWPSSLVASRRPSAGTTDTSKQLSCSPGSPSTS-----PKPQTFPDSGRSSLADK 506
+S V + +A+ +A T TSKQ S S +PSTS P T S S A
Sbjct: 2838 SSTANVASMAAMAAAAQAASTPTTSKQASASTSTPSTSAVASAQTPSTSVPSTSSQAAAA 2897
Query: 507 ATGEMKSVGWTSLLMLTRPMVSEGCRRTALVS 602
A S + L+LT M + ++ ++S
Sbjct: 2898 AASSANSGEDINPLLLTALMQNPAILQSMMLS 2929
>AC024776-1|AAK68468.1| 338|Caenorhabditis elegans Hypothetical
protein Y41D4B.18 protein.
Length = 338
Score = 29.1 bits (62), Expect = 3.4
Identities = 19/56 (33%), Positives = 30/56 (53%)
Frame = +3
Query: 390 PSAGTTDTSKQLSCSPGSPSTSPKPQTFPDSGRSSLADKATGEMKSVGWTSLLMLT 557
P+A + TS Q S S ++SP P P + R + A ++T ++V T+ L LT
Sbjct: 266 PTATSPKTSSQPVSSSTSSTSSPAPTNPPTTSRPTTASQSTAS-QNVETTTKLGLT 320
>U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical
protein T19D12.1 protein.
Length = 1844
Score = 28.7 bits (61), Expect = 4.5
Identities = 27/94 (28%), Positives = 40/94 (42%)
Frame = +3
Query: 357 VWPSSLVASRRPSAGTTDTSKQLSCSPGSPSTSPKPQTFPDSGRSSLADKATGEMKSVGW 536
V P++ ++RP++ T +S S G+ STSP P T S SS T
Sbjct: 334 VIPTTTQTTQRPTS--TGIPSTVSTSQGTSSTSPIPSTTQTS--SSAPSTYTSNFTPSPT 389
Query: 537 TSLLMLTRPMVSEGCRRTALVSVTRDGLITTTRP 638
T+LL T ++G ++ S TT P
Sbjct: 390 TTLLTSTIAPSTQGVPTSSKSSSPNSTPTTTITP 423
>AC024876-6|AAS80337.1| 181|Caenorhabditis elegans Hypothetical
protein Y94H6A.10 protein.
Length = 181
Score = 28.7 bits (61), Expect = 4.5
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +3
Query: 435 PGSPSTSPKP-QTFPDSGRSSLADKATGEMKSVGW 536
P S S S P + PDS RS++ K T +M+ GW
Sbjct: 28 PESSSKSKSPLKDGPDSQRSNIRRKLTTQMQKQGW 62
>U80438-4|AAB37634.2| 1415|Caenorhabditis elegans Uncoordinated
protein 40 protein.
Length = 1415
Score = 28.3 bits (60), Expect = 5.9
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +2
Query: 509 HGRDEVSGLDIPVDADETNGIRGVQTDCASLRDQ 610
HG D+ +G I ++A+ +NG G+ +D +R Q
Sbjct: 596 HGMDKYTGYQIRIEAEGSNG-SGLSSDTVKVRTQ 628
>U70618-1|AAB17088.1| 1415|Caenorhabditis elegans unc-40 protein.
Length = 1415
Score = 28.3 bits (60), Expect = 5.9
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +2
Query: 509 HGRDEVSGLDIPVDADETNGIRGVQTDCASLRDQ 610
HG D+ +G I ++A+ +NG G+ +D +R Q
Sbjct: 596 HGMDKYTGYQIRIEAEGSNG-SGLSSDTVKVRTQ 628
>Z30974-5|CAH19087.1| 3183|Caenorhabditis elegans Hypothetical protein
K08E5.3b protein.
Length = 3183
Score = 27.9 bits (59), Expect = 7.8
Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Frame = +3
Query: 390 PSAGTTDTSKQL--SCSPGSPSTSPKPQTFPDSGRSSLADKAT 512
P+A TDT + C G SP PQTFP L ++ T
Sbjct: 1087 PNALCTDTEEGYVCRCKSGFVDYSPNPQTFPGMVCKELVNECT 1129
>Z30974-4|CAA83226.2| 3767|Caenorhabditis elegans Hypothetical protein
K08E5.3a protein.
Length = 3767
Score = 27.9 bits (59), Expect = 7.8
Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Frame = +3
Query: 390 PSAGTTDTSKQL--SCSPGSPSTSPKPQTFPDSGRSSLADKAT 512
P+A TDT + C G SP PQTFP L ++ T
Sbjct: 1671 PNALCTDTEEGYVCRCKSGFVDYSPNPQTFPGMVCKELVNECT 1713
>Z30423-15|CAH19103.1| 3183|Caenorhabditis elegans Hypothetical
protein K08E5.3b protein.
Length = 3183
Score = 27.9 bits (59), Expect = 7.8
Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Frame = +3
Query: 390 PSAGTTDTSKQL--SCSPGSPSTSPKPQTFPDSGRSSLADKAT 512
P+A TDT + C G SP PQTFP L ++ T
Sbjct: 1087 PNALCTDTEEGYVCRCKSGFVDYSPNPQTFPGMVCKELVNECT 1129
>Z30423-14|CAC42345.1| 3767|Caenorhabditis elegans Hypothetical
protein K08E5.3a protein.
Length = 3767
Score = 27.9 bits (59), Expect = 7.8
Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Frame = +3
Query: 390 PSAGTTDTSKQL--SCSPGSPSTSPKPQTFPDSGRSSLADKAT 512
P+A TDT + C G SP PQTFP L ++ T
Sbjct: 1671 PNALCTDTEEGYVCRCKSGFVDYSPNPQTFPGMVCKELVNECT 1713
>AL110484-7|CAB54398.1| 286|Caenorhabditis elegans Hypothetical
protein Y38E10A.7 protein.
Length = 286
Score = 27.9 bits (59), Expect = 7.8
Identities = 16/42 (38%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
Frame = -2
Query: 328 VSDDVQVAVLLAGADENSAGTFVPVAEYIE---WIETTAGIT 212
+S + V+L NSAGTF P A Y W E T T
Sbjct: 59 LSPTTRTPVILVHGTTNSAGTFAPQAAYFRANGWSEETVYAT 100
>AF139060-1|AAD29428.1| 3767|Caenorhabditis elegans transmembrane cell
adhesion receptorMUA-3 precursor protein.
Length = 3767
Score = 27.9 bits (59), Expect = 7.8
Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Frame = +3
Query: 390 PSAGTTDTSKQL--SCSPGSPSTSPKPQTFPDSGRSSLADKAT 512
P+A TDT + C G SP PQTFP L ++ T
Sbjct: 1671 PNALCTDTEEGYVCRCKSGFVDYSPNPQTFPGMVCKELVNECT 1713
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,872,501
Number of Sequences: 27780
Number of extensions: 285324
Number of successful extensions: 1128
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1022
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1125
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1708383636
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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