Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV12a09f
(536 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g40070.1 68415.m04923 expressed protein 33 0.12
At1g77010.1 68414.m08968 pentatricopeptide (PPR) repeat-containi... 32 0.28
At4g24680.1 68417.m03533 expressed protein 30 1.1
At3g03450.1 68416.m00343 gibberellin response modulator, putativ... 30 1.1
At5g21280.1 68418.m02555 hydroxyproline-rich glycoprotein family... 29 1.5
At1g10880.1 68414.m01250 expressed protein contains Pfam profile... 29 1.5
At2g43610.1 68415.m05421 glycoside hydrolase family 19 protein s... 29 2.0
At1g21730.1 68414.m02720 kinesin-related protein (MKRP1) Similar... 29 2.0
At1g08140.1 68414.m00896 cation/hydrogen exchanger (CHX6a) Note:... 29 2.0
At5g43310.1 68418.m05293 COP1-interacting protein-related contai... 29 2.6
At1g21440.1 68414.m02681 mutase family protein similar to carbox... 29 2.6
At4g31670.1 68417.m04497 ubiquitin carboxyl-terminal hydrolase f... 28 3.4
At4g12490.1 68417.m01974 protease inhibitor/seed storage/lipid t... 28 3.4
At4g08670.1 68417.m01428 protease inhibitor/seed storage/lipid t... 28 3.4
At3g28790.1 68416.m03593 expressed protein 28 3.4
At2g22470.1 68415.m02664 arabinogalactan-protein (AGP2) identica... 28 3.4
At1g34000.2 68414.m04216 light stress-responsive one-helix prote... 28 4.5
At1g34000.1 68414.m04215 light stress-responsive one-helix prote... 28 4.5
At1g22410.1 68414.m02802 2-dehydro-3-deoxyphosphoheptonate aldol... 28 4.5
At3g18500.1 68416.m02351 nocturnin-related contains weak similar... 27 6.0
At2g48160.1 68415.m06031 PWWP domain-containing protein 27 6.0
At2g45880.1 68415.m05706 glycosyl hydrolase family 14 protein si... 27 6.0
At1g26240.1 68414.m03201 proline-rich extensin-like family prote... 27 6.0
At4g19820.1 68417.m02906 glycosyl hydrolase family 18 protein si... 27 7.9
At4g18760.1 68417.m02772 leucine-rich repeat family protein cont... 27 7.9
At3g57660.1 68416.m06424 DNA-directed RNA polymerase family prot... 27 7.9
At2g28440.1 68415.m03455 proline-rich family protein contains pr... 27 7.9
>At2g40070.1 68415.m04923 expressed protein
Length = 607
Score = 33.1 bits (72), Expect = 0.12
Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 5/87 (5%)
Frame = +2
Query: 284 TRPWSRRLAQSVCTPRIPLVS-SASTGMSNPLTSSL-PWLCLPARTYPNPEMSAALAKST 457
T P S+ +++S R P+ S SA+T +NP S + P PA+ P P + AL+++
Sbjct: 303 TLPPSKTISRSSTPTRRPIASASAATTTANPTISQIKPSSPAPAKPMPTPSKNPALSRAA 362
Query: 458 ANLESN*AASTCPWCP---PTVSLRPP 529
+ + PW P P SL P
Sbjct: 363 SP-----TVRSRPWKPSDMPGFSLETP 384
>At1g77010.1 68414.m08968 pentatricopeptide (PPR) repeat-containing
protein contains INTERPRO:IPR002885 PPR repeats
Length = 695
Score = 31.9 bits (69), Expect = 0.28
Identities = 20/74 (27%), Positives = 34/74 (45%)
Frame = -3
Query: 405 GRQSHGRDEVSGLDIPVDADETNGIRGVQTDCASLRDQGRVNYHHQTITDPDETDILEAA 226
G+Q H + + G++ D+ + + V C LR +Y + I +PD+ +
Sbjct: 206 GKQIHAQILIGGVEC--DSKMNSSLVNVYAKCGDLR---MASYMLEQIREPDDHSLSALI 260
Query: 225 SGAEDPARVNEGTG 184
SG + RVNE G
Sbjct: 261 SGYANCGRVNESRG 274
>At4g24680.1 68417.m03533 expressed protein
Length = 1480
Score = 29.9 bits (64), Expect = 1.1
Identities = 30/91 (32%), Positives = 40/91 (43%), Gaps = 4/91 (4%)
Frame = -1
Query: 503 GTTDTSKQLSCSPGSPS-TSPKPQTFPDSGRSSLAD--KATGEMKSVGWTSLLMLTRPMV 333
GT+ S + PGSPS S +P + R S AD KA SV W S +RP
Sbjct: 63 GTSSLSPRTESGPGSPSHLSNRPSSGGSVTRPSTADSNKAHDSSSSVAWDS---NSRPSS 119
Query: 332 SEGCRRTALVSVT-RDGLITTTRP*RTQMKR 243
+ G + SV + TRP +Q+ R
Sbjct: 120 ASGVFPSNQPSVALQRPHSADTRPGSSQLSR 150
>At3g03450.1 68416.m00343 gibberellin response modulator, putative /
gibberellin-responsive modulator, putative similar to
GAI (GI:2569938), RGA1 (GB:AAC67333) and RGA2
(GI:2339980) [Arabidopsis thaliana]; possible
involvement in nitrogen metabolism
Length = 547
Score = 29.9 bits (64), Expect = 1.1
Identities = 16/45 (35%), Positives = 26/45 (57%)
Frame = +1
Query: 58 LALVQGRSTGVQSTNALVALGDKPYQVHLRIAVSTSGLLNTCAGS 192
+ LV + TGV+ +ALVA + +Q +L +A + + T AGS
Sbjct: 168 VVLVDSQETGVRLVHALVACAEAIHQENLNLADALVKRVGTLAGS 212
>At5g21280.1 68418.m02555 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 302
Score = 29.5 bits (63), Expect = 1.5
Identities = 18/39 (46%), Positives = 25/39 (64%), Gaps = 3/39 (7%)
Frame = +2
Query: 116 SETSPTRSIYASLF--RPVVCSTPAPVPSFTLAGS-SAP 223
S +S T S +S+F P + S+P+P P+FT A S SAP
Sbjct: 162 SSSSSTSSSSSSIFPTNPHIYSSPSPPPTFTTATSDSAP 200
>At1g10880.1 68414.m01250 expressed protein contains Pfam profile
PF03267: Arabidopsis protein of unknown function, DUF266
Length = 651
Score = 29.5 bits (63), Expect = 1.5
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Frame = -1
Query: 479 LSCSP-GSPSTSPKPQTFPDSGRSSLADKATGEMKSVGWTSLLMLTRPMVSEGCRRTALV 303
LS +P SPS SP P P S S++AD + + W + + PM +E + A +
Sbjct: 69 LSSNPLTSPSLSPPPSPSPRSSGSNIAD------EELMWRAAMAPRSPMKNETHPKVAFM 122
Query: 302 SVTR 291
+TR
Sbjct: 123 FLTR 126
>At2g43610.1 68415.m05421 glycoside hydrolase family 19 protein
similar to chitinase GI:17799 from [Brassica napus];
contains Pfam profiles PF00182: Chitinase class I,
PF00187: Chitin recognition protein
Length = 281
Score = 29.1 bits (62), Expect = 2.0
Identities = 28/109 (25%), Positives = 38/109 (34%)
Frame = -1
Query: 533 SLVASRRPSAGTTDTSKQLSCSPGSPSTSPKPQTFPDSGRSSLADKATGEMKSVGWTSLL 354
++ SR GTT C G ++ PKP P SG L G + SV +
Sbjct: 39 NMCCSRWGYCGTTKAYCGTGCQSGPCNSKPKPTPTP-SGSGGLNAGPRGTIASVITPAFF 97
Query: 353 MLTRPMVSEGCRRTALVSVTRDGLITTTRP*RTQMKRTSWRQLAALRTQ 207
V GC A TR I + R++AA+ Q
Sbjct: 98 NSIMSKVGSGC--PAKGFYTRQAFIAAAESFAAYKGTVAKREIAAMLAQ 144
>At1g21730.1 68414.m02720 kinesin-related protein (MKRP1) Similar to
gb|U06698 neuronal kinesin heavy chain from Homo sapiens
and contains a PF|00225 Kinesin motor domain. EST
gb|AA042507 comes from this gene; identical to cDNA
MKRP1 mRNA for kinesin-related protein, GI:16902291,
kinesin-related protein [Arabidopsis thaliana]
GI:16902292
Length = 890
Score = 29.1 bits (62), Expect = 2.0
Identities = 18/42 (42%), Positives = 25/42 (59%)
Frame = +2
Query: 335 PLVSSASTGMSNPLTSSLPWLCLPARTYPNPEMSAALAKSTA 460
P S+S ++P+TSS P L R+ P+P S+A A STA
Sbjct: 29 PETPSSSHFSASPVTSSSPLL----RSSPSPSTSSAAASSTA 66
>At1g08140.1 68414.m00896 cation/hydrogen exchanger (CHX6a) Note:
CHX6a and CHX6b were originally 1 gene but were split
pased on alignments with other family members; may be a
pseudogene and requires futher investigation; monovalent
cation:proton antiporter family 2 (CPA2) member,
PMID:11500563
Length = 818
Score = 29.1 bits (62), Expect = 2.0
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = -3
Query: 297 DQGRVNYHHQTITDPDETD-ILEAASGAEDPARVNEGTGAGVEQTTG 160
+ +V Y + ++D ET IL A + D V G+G G E T+G
Sbjct: 724 NDAKVTYIDKAVSDGSETSRILRAMANDYDLFIVGSGSGIGTEATSG 770
>At5g43310.1 68418.m05293 COP1-interacting protein-related contains
similarity to COP1-Interacting Protein 7 (CIP7)
[Arabidopsis thaliana] GI:3327868
Length = 1237
Score = 28.7 bits (61), Expect = 2.6
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = -1
Query: 437 QTFPDSGRSSLADKATGEMKSVGWTSLLMLTRPMVSEGCRRTALVS 300
Q FP +G+ S K+TG M + + L R ++ G R T +S
Sbjct: 836 QKFPKNGKLSTVSKSTGNMLTRSISPLPPAKRESIATGIRLTRSIS 881
>At1g21440.1 68414.m02681 mutase family protein similar to
carboxyvinyl-carboxyphosphonate phosphorylmutase
GB:O49290 from [Arabidopsis thaliana]; similar to
carboxyphosphonoenolpyruvate mutase (GI:47149)
[Streptomyces hygroscopicus]; contains Prosite PS00161:
Isocitrate lyase signature
Length = 336
Score = 28.7 bits (61), Expect = 2.6
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Frame = +2
Query: 281 LTRPWSRRLAQSVCT--PRIPLVSSASTGMSNPL 376
+T P A+SVC P+IP+++ A TG N L
Sbjct: 95 ITPPEMAATARSVCAAAPKIPIIADADTGGGNAL 128
>At4g31670.1 68417.m04497 ubiquitin carboxyl-terminal hydrolase
family protein / zinc finger (MYND type) family protein
similar to ubiquitin-specific protease 15 (UBP15)
[Arabidopsis thaliana] GI:11993475; contains Pfam
profiles PF00443: Ubiquitin carboxyl-terminal hydrolase,
PF01753: MYND finger
Length = 631
Score = 28.3 bits (60), Expect = 3.4
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Frame = -1
Query: 536 SSLVASRRPSAGTTDTSKQLSCSPG-SPSTSPKPQTFPDSGRSSLADKATGEMKSV 372
SS+V + + T T + C SPS SP P P S LA + E++ +
Sbjct: 508 SSMVGAIESRSSTHATIEDPVCEQSPSPSPSPSPSPSPSPSPSVLASECCSEVERI 563
>At4g12490.1 68417.m01974 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein similar to pEARLI
1 (Accession No. L43080): an Arabidopsis member of a
conserved gene family (PGF95-099), Plant Physiol. 109
(4), 1497 (1995); contains Pfam protease inhibitor/seed
storage/LTP family domain PF00234
Length = 182
Score = 28.3 bits (60), Expect = 3.4
Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = +2
Query: 83 PVCKVPTPWLPSETSPTRSIYA-SLFRPVVCSTPAPVPSFT 202
P KVPTP +PS PT S+ + S+ P V S P P+ T
Sbjct: 45 PSPKVPTPSVPSPYVPTPSVPSPSVPTPSVPSPSVPSPNPT 85
>At4g08670.1 68417.m01428 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein contains Pfam
protease inhibitor/seed storage/LTP family domain
PF00234
Length = 208
Score = 28.3 bits (60), Expect = 3.4
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = -1
Query: 509 SAGTTDTSKQLSCSPGSPSTSPKPQTFPDSGRSSLADKATGEM 381
S TT + +S S G+P+TSP P++ +S + T M
Sbjct: 130 SGATTPGASPVSPSAGAPTTSPSAAKSPETSATSPSSDETPSM 172
>At3g28790.1 68416.m03593 expressed protein
Length = 608
Score = 28.3 bits (60), Expect = 3.4
Identities = 19/41 (46%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Frame = -1
Query: 521 SRRPSAGTT--DTSKQLSCSP-GSPSTSPKPQTFPDSGRSS 408
+ + S+G T DT+ S SP GSPS SP P T D SS
Sbjct: 355 TNKGSSGDTYKDTTGTSSGSPSGSPSGSPTPSTSTDGKASS 395
>At2g22470.1 68415.m02664 arabinogalactan-protein (AGP2) identical
to gi|3883122|gb|AAC77824; supported by cDNA
gi|3883121|gb|AF082299
Length = 131
Score = 28.3 bits (60), Expect = 3.4
Identities = 20/49 (40%), Positives = 23/49 (46%)
Frame = +2
Query: 77 AAPVCKVPTPWLPSETSPTRSIYASLFRPVVCSTPAPVPSFTLAGSSAP 223
A+P V P TSPT S AS P PAP PS L +S+P
Sbjct: 50 ASPPVPVNEPTPAPTTSPTTSPVAS---PPQTDAPAPGPSAGLTPTSSP 95
>At1g34000.2 68414.m04216 light stress-responsive one-helix protein
(OHP2) contains similarity to photosystem II 22 kDa
protein GI:6006279 from [Arabidopsis thaliana]
Length = 145
Score = 27.9 bits (59), Expect = 4.5
Identities = 14/31 (45%), Positives = 15/31 (48%)
Frame = -1
Query: 518 RRPSAGTTDTSKQLSCSPGSPSTSPKPQTFP 426
RRPSA T Q P PS+SP P P
Sbjct: 51 RRPSAPPTLREPQKPVPPSQPSSSPPPSPPP 81
>At1g34000.1 68414.m04215 light stress-responsive one-helix protein
(OHP2) contains similarity to photosystem II 22 kDa
protein GI:6006279 from [Arabidopsis thaliana]
Length = 172
Score = 27.9 bits (59), Expect = 4.5
Identities = 14/31 (45%), Positives = 15/31 (48%)
Frame = -1
Query: 518 RRPSAGTTDTSKQLSCSPGSPSTSPKPQTFP 426
RRPSA T Q P PS+SP P P
Sbjct: 51 RRPSAPPTLREPQKPVPPSQPSSSPPPSPPP 81
>At1g22410.1 68414.m02802 2-dehydro-3-deoxyphosphoheptonate
aldolase, putative / 3-deoxy-D-arabino-heptulosonate
7-phosphate synthase, putative / DAHP synthetase,
putative similar to 3-deoxy-D-arabino-heptulosonate
7-phosphate GI:170224 from [Nicotiana tabacum],
SP|P21357 from Solanum tuberosum; contains Pfam Class-II
DAHP synthetase family domain PF01474
Length = 527
Score = 27.9 bits (59), Expect = 4.5
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +2
Query: 281 LTRPWSRRLAQSVCTPRIPLVSSASTGMSNPLTSSLP 391
++RP S R++ P+ P SSAS + P T + P
Sbjct: 29 VSRPTSFRISAVQTDPKTPAASSASAATTTPATLTKP 65
>At3g18500.1 68416.m02351 nocturnin-related contains weak similarity
to Nocturnin (CCR4 protein homolog) (Swiss-Prot:O35710)
[Mus musculus]
Length = 262
Score = 27.5 bits (58), Expect = 6.0
Identities = 11/40 (27%), Positives = 20/40 (50%)
Frame = +1
Query: 160 TSGLLNTCAGSLIHSRWVLSAASCLQDVRFIWVRYGLVVV 279
T L + G ++HS LS+ S + R+ WV + ++
Sbjct: 218 TLSLASLVCGIMLHSLLFLSSGSLISQERYCWVTFTCFII 257
>At2g48160.1 68415.m06031 PWWP domain-containing protein
Length = 1366
Score = 27.5 bits (58), Expect = 6.0
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Frame = -1
Query: 515 RPSAGTTDTSKQLSCSPGSPSTSPKPQTFPDS--GRSSLADKATGEMKSVGWTSL 357
RP GT+ LS SP PS+SP P P S G ++ D ++ G+ ++
Sbjct: 1123 RPVFGTSHQHMSLS-SPPLPSSSPPPPPAPPSQQGECAMPDSYLNGFENGGYRNV 1176
>At2g45880.1 68415.m05706 glycosyl hydrolase family 14 protein
similar to beta-amylase GI:13560977 from [Castanea
crenata]
Length = 691
Score = 27.5 bits (58), Expect = 6.0
Identities = 11/40 (27%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Frame = +3
Query: 87 CAKYQRPGCPRRQA--LPGPSTHRCFDQWSAQHLRRFPHS 200
C + + P CP + PG +C+D++ ++ LR+ S
Sbjct: 420 CGELRYPSCPIKHGWRYPGVGEFQCYDKYLSKSLRKAAES 459
>At1g26240.1 68414.m03201 proline-rich extensin-like family protein
similar to hydroxyproline-rich glycoprotein precursor
gi|727264|gb|AAA87902; contains proline-rich extensin
domains, INTERPRO:IPR002965
Length = 478
Score = 27.5 bits (58), Expect = 6.0
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = +2
Query: 98 PTPWLPSETSPTRSIYASLFRP-VVCSTPAPVPSFTLAGSSAP 223
P P++ S P +Y S P V +P P PS++ + SS P
Sbjct: 432 PPPYVYSSPPPPPYVYKSPSPPPYVYKSPPPPPSYSYSYSSPP 474
>At4g19820.1 68417.m02906 glycosyl hydrolase family 18 protein
similar to chitinase/lysozyme GI:467689 from [Nicotiana
tabacum]
Length = 366
Score = 27.1 bits (57), Expect = 7.9
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = +2
Query: 38 LLYYCAVLLWYRGAAPVCKVPTPWLPSETSPTRSIYASLFRPVVCS 175
+ ++ ++LL + A V K T W SP I +SLF + C+
Sbjct: 9 ITFFLSLLLRFSSAQTVVKA-TYWFAESESPLAQIDSSLFTHLFCA 53
>At4g18760.1 68417.m02772 leucine-rich repeat family protein
contains leucine rich-repeat domains Pfam:PF00560,
INTERPRO:IPR001611
Length = 431
Score = 27.1 bits (57), Expect = 7.9
Identities = 22/77 (28%), Positives = 31/77 (40%)
Frame = -1
Query: 506 AGTTDTSKQLSCSPGSPSTSPKPQTFPDSGRSSLADKATGEMKSVGWTSLLMLTRPMVSE 327
+ T + LS +P SP+TSP P P S S L K ++S L P V +
Sbjct: 16 SATISAAPSLSPTP-SPTTSPIPPHKPSSSSSPLDPKQLKALES--------LNIPTVKD 66
Query: 326 GCRRTALVSVTRDGLIT 276
C T ++T
Sbjct: 67 PCNHRPTTKSTSSSVVT 83
>At3g57660.1 68416.m06424 DNA-directed RNA polymerase family protein
similar to SP|O35134 DNA-directed RNA polymerase I
largest subunit (EC 2.7.7.6) (RNA polymerase I 194 kDa
subunit) (RPA194) {Mus musculus}; contains InterPro
accession IPR000722: RNA polymerase, alpha subunit
Length = 1670
Score = 27.1 bits (57), Expect = 7.9
Identities = 24/87 (27%), Positives = 37/87 (42%), Gaps = 5/87 (5%)
Frame = -3
Query: 411 LAGRQSHGRDEVSGLDIPVDAD---ETNGIRGVQTDCASLRDQGRVNYHHQTITDPDETD 241
+AG ++ D VSG D D E + + +D + Q ++ ++ DET+
Sbjct: 1321 IAGNETDNDDSVSGKQNEDDGDDDGEGTEVDDLGSDAQKQKKQETDEMDYEENSE-DETN 1379
Query: 240 ILEAASGAEDPA--RVNEGTGAGVEQT 166
+ SG EDP NE T E T
Sbjct: 1380 EPSSISGVEDPEMDSENEDTEVSKEDT 1406
>At2g28440.1 68415.m03455 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965;
contains similarity to vegetative cell wall protein gp1
[Chlamydomonas reinhardtii] gi|12018147|gb|AAG45420; +
Length = 268
Score = 27.1 bits (57), Expect = 7.9
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = -1
Query: 470 SPGSPSTSPKPQTFPDS 420
SP SP++SPKP++ DS
Sbjct: 127 SPQSPASSPKPESLADS 143
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,172,023
Number of Sequences: 28952
Number of extensions: 318985
Number of successful extensions: 1229
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 1155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1224
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 993966856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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