Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV12a07r
(753 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U29380-14|AAA68746.2| 293|Caenorhabditis elegans Trypsin-like p... 71 7e-13
U70848-2|AAB09110.4| 313|Caenorhabditis elegans Trypsin-like pr... 69 4e-12
U58751-11|AAB00662.1| 265|Caenorhabditis elegans Trypsin-like p... 60 2e-09
Z92832-5|CAB07374.2| 292|Caenorhabditis elegans Hypothetical pr... 38 0.006
AF003384-12|AAB54236.2| 331|Caenorhabditis elegans Trypsin-like... 38 0.006
Z78013-9|CAB01420.2| 297|Caenorhabditis elegans Hypothetical pr... 38 0.010
AL110484-17|CAB54408.1| 586|Caenorhabditis elegans Hypothetical... 30 2.0
Z35719-1|CAA84800.1| 296|Caenorhabditis elegans Hypothetical pr... 29 2.7
X70836-1|CAA50184.1| 636|Caenorhabditis elegans Cytoplasmic int... 29 4.7
U56860-4|AAM69100.1| 1128|Caenorhabditis elegans Intermediate fi... 29 4.7
U56860-3|AAM69101.1| 1248|Caenorhabditis elegans Intermediate fi... 29 4.7
U50197-2|AAA91255.2| 624|Caenorhabditis elegans Hypothetical pr... 29 4.7
Z95621-2|CAB09131.1| 330|Caenorhabditis elegans Hypothetical pr... 28 8.2
Z78019-9|CAB01457.1| 330|Caenorhabditis elegans Hypothetical pr... 28 8.2
AY551965-1|AAS65429.1| 2395|Caenorhabditis elegans Swi/Snf famil... 28 8.2
AL132904-26|CAC35851.3| 2395|Caenorhabditis elegans Hypothetical... 28 8.2
>U29380-14|AAA68746.2| 293|Caenorhabditis elegans Trypsin-like
protease protein 1 protein.
Length = 293
Score = 71.3 bits (167), Expect = 7e-13
Identities = 69/251 (27%), Positives = 114/251 (45%), Gaps = 8/251 (3%)
Frame = -2
Query: 752 RRAEEAADFDGT--RIVGGSAANAGAHPHLAGLVIALTNGRTSICGASLLTNTRSVTAAH 579
R A+E AD+ R++GGS ++ + P L+ L + R CG SL+ +TAAH
Sbjct: 43 RSAQEPADYVTLDHRLIGGSESSPHSWPWTVQLLSRLGHHR---CGGSLIDPNFVLTAAH 99
Query: 578 CWRTRRAQARQFTLALGTANIFSGGTRVTTSNVQMHGSYNMDTLHN-DVAIIN-HNHVGF 405
C+ R + +++ +G SG T+ V +H YN+ + D AI+ H V
Sbjct: 100 CFAKDR-RPTSYSVRVGGHRSGSGSPHRVTA-VSIHPWYNIGFPSSYDFAIMRIHPPVNT 157
Query: 404 TNNIQRINLASGSNNXXXXXXXXXXXGRTSDAASGANNQQKRQVSLQVITNAVCAR--TF 231
+ + I L S ++ S + R++ + +++ C+ +
Sbjct: 158 STTARPICLPSLP--AVENRLCVVTGWGSTIEGSSLSAPTLREIHVPLLSTLFCSSLPNY 215
Query: 230 GNNVIIASTLCVDGSNGR-STCSGDSGGPLTIGSGGSRQLIGITSFGSAQGCQR-GHPAG 57
+ + S LC S G+ +C GDSGGPL G +L G+ S+G GC R G P
Sbjct: 216 IGRIHLPSMLCAGYSYGKIDSCQGDSGGPLMCARDGHWELTGVVSWGI--GCARPGMPGV 273
Query: 56 FARVTSFNSWI 24
+ V S ++WI
Sbjct: 274 YGNVHSASTWI 284
>U70848-2|AAB09110.4| 313|Caenorhabditis elegans Trypsin-like
protease protein 3 protein.
Length = 313
Score = 68.9 bits (161), Expect = 4e-12
Identities = 69/252 (27%), Positives = 109/252 (43%), Gaps = 17/252 (6%)
Frame = -2
Query: 716 RIVGGSAANAGAHPHLAGLVIALTNGRTSICGASLLTNTRSVTAAHCWRTRRAQARQFTL 537
RI+GG++ + GA+ +A LV NG+ +CGA+++ + VTAAHC + Q R F
Sbjct: 37 RIIGGNSIDDGAN-WMAKLVSYGDNGQGILCGATVIDDFWLVTAAHC--ALQLQTRSFVY 93
Query: 536 ALGTANIFSGGTRVTTSNVQMHGSYNMDTLHNDVAIINHNHVGFTNNIQRINLASGSN-- 363
N + + +H YN T ND+A++ + I+ + L +
Sbjct: 94 VREPKN--NRERSFSVKEAYIHSGYNNQTADNDIALLRISSDLSKLGIKPVCLVHDDSKL 151
Query: 362 -----NXXXXXXXXXXXGRTSDAASGANNQQKRQVSLQVITNAVCARTFG----NNVIIA 210
N +S N+Q + S+ +I++ C +T+ +V I
Sbjct: 152 LKQYKNGVVIGYGLTLGEDSSGEPKLINSQTLQSTSVPIISDDDCVKTWRFLSLLSVKIT 211
Query: 209 STLCVDGSNGRSTCSGDSGGPLTI-GSGGSRQLIGITSFGSAQGC-----QRGHPAGFAR 48
G+ T GDSGGPL I S G IGITS+G A G Q P + R
Sbjct: 212 GYQICAGAYLHGTAPGDSGGPLLIHKSNGEYVQIGITSYG-ADGLDGVIDQGKFPGVYTR 270
Query: 47 VTSFNSWIRARI 12
++ + WI+ I
Sbjct: 271 ISKYVPWIQGVI 282
>U58751-11|AAB00662.1| 265|Caenorhabditis elegans Trypsin-like
protease protein 2 protein.
Length = 265
Score = 59.7 bits (138), Expect = 2e-09
Identities = 66/252 (26%), Positives = 99/252 (39%), Gaps = 7/252 (2%)
Frame = -2
Query: 746 AEEAADFDGTRIVGGSAANAGAHPHLAGLVIALTNGRTSICGASLLTNTRSVTAAHCW-R 570
A +AA R+VGG GA P A L T CGAS+L T +TAAHC+
Sbjct: 16 ARDAAKSRIARVVGGFETVPGAFPWTAALRNKATKAHH--CGASILDKTHLITAAHCFEE 73
Query: 569 TRRAQARQFTLALGTANIFSGGTRV-TTSNVQMHGSYNMDTLHNDVAIINHNHVGFTNNI 393
R + + + N G ++ + + Y D +D+AI+ + G N
Sbjct: 74 DERVSSYEVVVGDWDNNQTDGNEQIFYLQRIHFYPLYK-DIFSHDIAILEIPYPGIEFNE 132
Query: 392 QRINLASGSNNXXXXXXXXXXXGRTSDAASGANNQQKRQVSLQVITNAV-CARTFG-NNV 219
+ S + + + G ++ Q +L I N C + +
Sbjct: 133 YAQPICLPSKDFVYTPGRQCVV--SGWGSMGLRYAERLQAALIPIINRFDCVNSSQIYSS 190
Query: 218 IIASTLCVDG-SNGRSTCSGDSGGPLTI-GSGGSRQLIGITSFGSAQGC-QRGHPAGFAR 48
+ S C G +C GDSGGP G+ L G+ S+G GC Q+ P +
Sbjct: 191 MSRSAFCAGYLEGGIDSCQGDSGGPFACRREDGAFVLAGVISWG--DGCAQKKQPGIYTM 248
Query: 47 VTSFNSWIRARI 12
V + SWI A I
Sbjct: 249 VAPYLSWISAII 260
>Z92832-5|CAB07374.2| 292|Caenorhabditis elegans Hypothetical
protein F31D4.6 protein.
Length = 292
Score = 38.3 bits (85), Expect = 0.006
Identities = 25/66 (37%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Frame = -2
Query: 227 NNVIIASTLCVDGSNGRSTCSGDSGGPLTI--GSGGSRQLIGITSFGSAQGCQRGHPAGF 54
++ I A+++ V + TC GDSGG L + G LI ITSFG+ +GC A F
Sbjct: 216 DDFICATSMNVSNYSAPRTCHGDSGGGLEYRDDNYGRAFLIAITSFGT-RGCPSNMLARF 274
Query: 53 ARVTSF 36
RV +
Sbjct: 275 TRVDMY 280
>AF003384-12|AAB54236.2| 331|Caenorhabditis elegans Trypsin-like
protease protein 5 protein.
Length = 331
Score = 38.3 bits (85), Expect = 0.006
Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Frame = -2
Query: 275 VSLQVITNAVCARTFGNNVIIASTLCVDGSNGRSTCSGDSGGPLTIGSGGSRQ--LIGIT 102
++L T A C +G ++ S C ++ CSGDSGG LT S + +I I
Sbjct: 236 LTLATETLATCEENWGTSIPFDS-FCTAEEEDKNVCSGDSGGGLTFHQSDSAREFIIAIV 294
Query: 101 SFGS 90
S+GS
Sbjct: 295 SYGS 298
Score = 29.1 bits (62), Expect = 3.5
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 5/49 (10%)
Frame = -2
Query: 701 SAANAGAHPHLAGLVIAL-TNGRTS----ICGASLLTNTRSVTAAHCWR 570
+A N G HLA + + R ICG +L+T +TAAHC++
Sbjct: 32 AAGNTGNPTHLAPWAVQIRVKARKGDFEVICGGTLITLKHVLTAAHCFQ 80
>Z78013-9|CAB01420.2| 297|Caenorhabditis elegans Hypothetical
protein F15B9.5 protein.
Length = 297
Score = 37.5 bits (83), Expect = 0.010
Identities = 16/48 (33%), Positives = 28/48 (58%)
Frame = -2
Query: 719 TRIVGGSAANAGAHPHLAGLVIALTNGRTSICGASLLTNTRSVTAAHC 576
T I+ G +AN+ LA ++ +G T++CG L+ + +T+AHC
Sbjct: 15 TSIINGFSANSFDTLSLASVITRFPDGTTNVCGGVLIAPSIVITSAHC 62
>AL110484-17|CAB54408.1| 586|Caenorhabditis elegans Hypothetical
protein Y38E10A.17 protein.
Length = 586
Score = 29.9 bits (64), Expect = 2.0
Identities = 25/80 (31%), Positives = 36/80 (45%), Gaps = 3/80 (3%)
Frame = -2
Query: 317 SDAASGANNQQKRQVSLQVITNAVCARTFGNNVI---IASTLCVDGSNGRSTCSGDSGGP 147
+ AA+G NN S +V + A+ FG + I + GS G G SGG
Sbjct: 419 TSAANGGNNAGGGGSSAEVRSVGFGAQQFGGSQFARPIPAGGGGGGSGGYGAGGGGSGGY 478
Query: 146 LTIGSGGSRQLIGITSFGSA 87
G+GG+R S+GS+
Sbjct: 479 GAGGAGGARNSASNGSYGSS 498
>Z35719-1|CAA84800.1| 296|Caenorhabditis elegans Hypothetical
protein F17C8.2 protein.
Length = 296
Score = 29.5 bits (63), Expect = 2.7
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = +3
Query: 492 GDPGASGEDVSCAKSEGELTSLGSPGPP 575
G+PGA G+D K +GE G PGPP
Sbjct: 201 GEPGAPGKDGE--KGKGEPGPAGPPGPP 226
>X70836-1|CAA50184.1| 636|Caenorhabditis elegans Cytoplasmic
intermediate filament(IF) protein protein.
Length = 636
Score = 28.7 bits (61), Expect = 4.7
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -2
Query: 446 HNDVAIINHNHVGFTNNIQRINLASGSNN 360
HN++A+ N + ++ +QRINL NN
Sbjct: 203 HNEIALKNERSLNVSDLLQRINLLQTENN 231
>U56860-4|AAM69100.1| 1128|Caenorhabditis elegans Intermediate
filament, c protein2, isoform a protein.
Length = 1128
Score = 28.7 bits (61), Expect = 4.7
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -2
Query: 446 HNDVAIINHNHVGFTNNIQRINLASGSNN 360
HN++A+ N + ++ +QRINL NN
Sbjct: 829 HNEIALKNERSLNVSDLLQRINLLQTENN 857
>U56860-3|AAM69101.1| 1248|Caenorhabditis elegans Intermediate
filament, c protein2, isoform b protein.
Length = 1248
Score = 28.7 bits (61), Expect = 4.7
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -2
Query: 446 HNDVAIINHNHVGFTNNIQRINLASGSNN 360
HN++A+ N + ++ +QRINL NN
Sbjct: 829 HNEIALKNERSLNVSDLLQRINLLQTENN 857
>U50197-2|AAA91255.2| 624|Caenorhabditis elegans Hypothetical
protein F25E2.2 protein.
Length = 624
Score = 28.7 bits (61), Expect = 4.7
Identities = 22/74 (29%), Positives = 31/74 (41%), Gaps = 4/74 (5%)
Frame = -1
Query: 411 WLHQQHPAHQPSQWKQQLCWYLGLGCRLRKDLRCCFGSQQP-TKTPSEPPGHYQRRL-RP 238
+L +Q PAHQ Q K+Q C C +C ++ P E + R++ R
Sbjct: 530 FLEEQEPAHQKEQNKEQDCPINSKSCEKCSHSKCEKCAKHPHHHCKCEDQKEFNRKIVRA 589
Query: 237 HVWKQCDHC--LHP 202
K CD C HP
Sbjct: 590 LCPKTCDICNETHP 603
>Z95621-2|CAB09131.1| 330|Caenorhabditis elegans Hypothetical
protein ZK863.2 protein.
Length = 330
Score = 27.9 bits (59), Expect = 8.2
Identities = 14/28 (50%), Positives = 16/28 (57%)
Frame = +3
Query: 492 GDPGASGEDVSCAKSEGELTSLGSPGPP 575
G+PGA G+ A S GE G PGPP
Sbjct: 122 GNPGADGD----AGSPGEAGGAGPPGPP 145
>Z78019-9|CAB01457.1| 330|Caenorhabditis elegans Hypothetical
protein ZK863.2 protein.
Length = 330
Score = 27.9 bits (59), Expect = 8.2
Identities = 14/28 (50%), Positives = 16/28 (57%)
Frame = +3
Query: 492 GDPGASGEDVSCAKSEGELTSLGSPGPP 575
G+PGA G+ A S GE G PGPP
Sbjct: 122 GNPGADGD----AGSPGEAGGAGPPGPP 145
>AY551965-1|AAS65429.1| 2395|Caenorhabditis elegans Swi/Snf family
ATPase protein.
Length = 2395
Score = 27.9 bits (59), Expect = 8.2
Identities = 18/58 (31%), Positives = 27/58 (46%)
Frame = -2
Query: 323 RTSDAASGANNQQKRQVSLQVITNAVCARTFGNNVIIASTLCVDGSNGRSTCSGDSGG 150
R + AA+G+N Q +Q Q + C + V+ + + DG G ST G GG
Sbjct: 2071 RNAAAAAGSNVQFIQQQQQQQQSGKNCGQGQSFVVMGSQSSSNDGQGGASTVGGGGGG 2128
>AL132904-26|CAC35851.3| 2395|Caenorhabditis elegans Hypothetical
protein Y111B2A.22 protein.
Length = 2395
Score = 27.9 bits (59), Expect = 8.2
Identities = 18/58 (31%), Positives = 27/58 (46%)
Frame = -2
Query: 323 RTSDAASGANNQQKRQVSLQVITNAVCARTFGNNVIIASTLCVDGSNGRSTCSGDSGG 150
R + AA+G+N Q +Q Q + C + V+ + + DG G ST G GG
Sbjct: 2071 RNAAAAAGSNVQFIQQQQQQQQSGKNCGQGQSFVVMGSQSSSNDGQGGASTVGGGGGG 2128
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,913,127
Number of Sequences: 27780
Number of extensions: 311898
Number of successful extensions: 1539
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1262
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1531
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1788025660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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