Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12a07r
         (753 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g15780.1 68418.m01845 pollen Ole e 1 allergen and extensin fa...    33   0.20 
At1g73500.1 68414.m08509 mitogen-activated protein kinase kinase...    32   0.36 
At1g76950.1 68414.m08958 zinc finger protein (PRAF1) / regulator...    31   0.62 
At5g58160.1 68418.m07280 formin homology 2 domain-containing pro...    29   3.3  
At3g56880.1 68416.m06327 VQ motif-containing protein contains PF...    29   3.3  
At4g13800.1 68417.m02139 permease-related contains 9 predicted t...    28   5.8  
At4g37690.1 68417.m05332 galactosyl transferase GMA12/MNN10 fami...    28   7.7  
At3g28780.1 68416.m03592 glycine-rich protein similar to H41 gen...    28   7.7  

>At5g15780.1 68418.m01845 pollen Ole e 1 allergen and extensin
           family protein contains Pfam profile PF01190: Pollen
           proteins Ole e I family
          Length = 401

 Score = 33.1 bits (72), Expect = 0.20
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = +1

Query: 82  P*ADPNDVIPIS*RLPPLPMVRGPPESPLQVLRPLEPS 195
           P   PN +IP    LPP+P++  PP  P   L P  P+
Sbjct: 284 PTLPPNPLIPSPPSLPPIPLIPTPPTLPTIPLLPTPPT 321


>At1g73500.1 68414.m08509 mitogen-activated protein kinase kinase
           (MAPKK), putative (MKK9) mitogen-activated protein
           kinase kinase (MAPKK) family, PMID:12119167
          Length = 310

 Score = 32.3 bits (70), Expect = 0.36
 Identities = 17/55 (30%), Positives = 29/55 (52%)
 Frame = -2

Query: 290 QQKRQVSLQVITNAVCARTFGNNVIIASTLCVDGSNGRSTCSGDSGGPLTIGSGG 126
           +++RQ++L++    +  R F  +   A+T  V G NG S C  +    L  G+GG
Sbjct: 5   RERRQLNLRLPLPPISDRRFSTSSSSATTTTVAGCNGISACDLEKLNVLGCGNGG 59


>At1g76950.1 68414.m08958 zinc finger protein (PRAF1) / regulator of
           chromosome condensation (RCC1) family protein identical
           to zinc finger protein PRAF1 [Arabidopsis thaliana]
           gi|15811367|gb|AAL08940.
          Length = 1103

 Score = 31.5 bits (68), Expect = 0.62
 Identities = 18/47 (38%), Positives = 24/47 (51%)
 Frame = -2

Query: 206 TLCVDGSNGRSTCSGDSGGPLTIGSGGSRQLIGITSFGSAQGCQRGH 66
           TL   G  GRS   G SGG L++ +  SR+L   +   S+    RGH
Sbjct: 121 TLISTGQGGRSKIDGWSGGGLSVDA--SRELTSSSPSSSSASASRGH 165


>At5g58160.1 68418.m07280 formin homology 2 domain-containing
           protein / FH2 domain-containing protein low similarity
           to SP|Q05858 Formin (Limb deformity protein) {Gallus
           gallus}; contains Pfam profile PF02181: Formin Homology
           2(FH2) Domain
          Length = 1307

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 18/45 (40%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
 Frame = -3

Query: 334 PASEGPPMLLREPTTNKNAK*ASRSLP-TPSAPARLETM*SLPPP 203
           P    PP     PT   N   A +S P  P AP RL T  + PPP
Sbjct: 728 PPPPPPPPPPAPPTPQSNGISAMKSSPPAPPAPPRLPTHSASPPP 772


>At3g56880.1 68416.m06327 VQ motif-containing protein contains
           PF05678: VQ motif
          Length = 245

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = -1

Query: 678 PPSCWTCDRTDEWQNFHLRSFLTDQHPLRDRRSLLEDQESPGSSVHPRS 532
           PPSC   DR+         SFL++ H    + +++ D  +P  S H +S
Sbjct: 168 PPSCGNLDRSSAVPTLDTSSFLSNHH----QENIITDLGAPTGSFHHQS 212


>At4g13800.1 68417.m02139 permease-related contains 9 predicted
           transmembrane domains; contains Pfam PF05653: Protein of
           unknown function (DUF803); identified as COG0697,
           Permeases of the drug/metabolite transporter (DMT)
           superfamily
          Length = 336

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +3

Query: 657 HKSSKMGVSTSVGGRTTHNP 716
           HK+  MG STS+ G T+H+P
Sbjct: 294 HKTKDMGNSTSLRGSTSHSP 313


>At4g37690.1 68417.m05332 galactosyl transferase GMA12/MNN10 family
           protein low similarity to
           alpha-1,2-galactosyltransferase, Schizosaccharomyces
           pombe [SP|Q09174]
          Length = 432

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 15/40 (37%), Positives = 18/40 (45%)
 Frame = -2

Query: 137 GSGGSRQLIGITSFGSAQGCQRGHPAGFARVTSFNSWIRA 18
           G  GSR+   IT F   Q C   H   +   T +N  IRA
Sbjct: 356 GGRGSRRRAFITHFTGCQPCSGDHNPSYDGDTCWNEMIRA 395


>At3g28780.1 68416.m03592 glycine-rich protein similar to H41 gene
           for histone protein GB:X15142 GI:3204 [Physarum
           polycephalum]
          Length = 614

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 17/66 (25%), Positives = 26/66 (39%)
 Frame = -2

Query: 320 TSDAASGANNQQKRQVSLQVITNAVCARTFGNNVIIASTLCVDGSNGRSTCSGDSGGPLT 141
           +++A SG + +             V   + G +     T     S G +T  G SGG  T
Sbjct: 478 STEAGSGTSTETSSMGGGSAAAGGVSESSSGGSTAAGGT-SESASGGSATAGGASGGTYT 536

Query: 140 IGSGGS 123
             +GGS
Sbjct: 537 DSTGGS 542


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,427,797
Number of Sequences: 28952
Number of extensions: 294884
Number of successful extensions: 1289
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1289
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1672953192
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)