BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fmgV12a07f (647 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value U70848-2|AAB09110.4| 313|Caenorhabditis elegans Trypsin-like pr... 50 2e-06 U58751-11|AAB00662.1| 265|Caenorhabditis elegans Trypsin-like p... 40 0.001 Z78013-9|CAB01420.2| 297|Caenorhabditis elegans Hypothetical pr... 38 0.008 U29380-14|AAA68746.2| 293|Caenorhabditis elegans Trypsin-like p... 37 0.014 Z35719-1|CAA84800.1| 296|Caenorhabditis elegans Hypothetical pr... 29 2.1 AF003384-12|AAB54236.2| 331|Caenorhabditis elegans Trypsin-like... 29 2.8 Z99278-4|CAB16492.1| 871|Caenorhabditis elegans Hypothetical pr... 29 3.8 Z99278-3|CAB16493.1| 867|Caenorhabditis elegans Hypothetical pr... 29 3.8 X70836-1|CAA50184.1| 636|Caenorhabditis elegans Cytoplasmic int... 29 3.8 U56860-4|AAM69100.1| 1128|Caenorhabditis elegans Intermediate fi... 29 3.8 U56860-3|AAM69101.1| 1248|Caenorhabditis elegans Intermediate fi... 29 3.8 AL023844-1|CAA19526.1| 401|Caenorhabditis elegans Hypothetical ... 28 5.0 Z95621-2|CAB09131.1| 330|Caenorhabditis elegans Hypothetical pr... 28 6.6 Z78019-9|CAB01457.1| 330|Caenorhabditis elegans Hypothetical pr... 28 6.6 L15419-1|AAA17726.1| 308|Caenorhabditis elegans col-40 collagen... 27 8.7 AF026211-4|AAB71295.1| 416|Caenorhabditis elegans Collagen prot... 27 8.7 AF003390-3|AAB54272.1| 1308|Caenorhabditis elegans Hypothetical ... 27 8.7 >U70848-2|AAB09110.4| 313|Caenorhabditis elegans Trypsin-like protease protein 3 protein. Length = 313 Score = 49.6 bits (113), Expect = 2e-06 Identities = 31/97 (31%), Positives = 50/97 (51%) Frame = +2 Query: 185 RIVGGSAANAGAHPHLAGLVIALTNGRTSICGASLLTNTRSVTAAHCWRTRRAQARQFTL 364 RI+GG++ + GA+ +A LV NG+ +CGA+++ + VTAAHC + Q R F Sbjct: 37 RIIGGNSIDDGAN-WMAKLVSYGDNGQGILCGATVIDDFWLVTAAHC--ALQLQTRSFVY 93 Query: 365 ALGTANIFSGGTRVTTSNVQMHGSYNMDTLHNDVAII 475 N + + +H YN T ND+A++ Sbjct: 94 VREPKN--NRERSFSVKEAYIHSGYNNQTADNDIALL 128 >U58751-11|AAB00662.1| 265|Caenorhabditis elegans Trypsin-like protease protein 2 protein. Length = 265 Score = 40.3 bits (90), Expect = 0.001 Identities = 31/109 (28%), Positives = 46/109 (42%), Gaps = 2/109 (1%) Frame = +2 Query: 185 RIVGGSAANAGAHPHLAGLVIALTNGRTSICGASLLTNTRSVTAAHCW-RTRRAQARQFT 361 R+VGG GA P A L T CGAS+L T +TAAHC+ R + + Sbjct: 26 RVVGGFETVPGAFPWTAALRNKATKAHH--CGASILDKTHLITAAHCFEEDERVSSYEVV 83 Query: 362 LALGTANIFSGGTRV-TTSNVQMHGSYNMDTLHNDVAIINHNHVGFTNN 505 + N G ++ + + Y D +D+AI+ + G N Sbjct: 84 VGDWDNNQTDGNEQIFYLQRIHFYPLYK-DIFSHDIAILEIPYPGIEFN 131 >Z78013-9|CAB01420.2| 297|Caenorhabditis elegans Hypothetical protein F15B9.5 protein. Length = 297 Score = 37.5 bits (83), Expect = 0.008 Identities = 16/48 (33%), Positives = 28/48 (58%) Frame = +2 Query: 182 TRIVGGSAANAGAHPHLAGLVIALTNGRTSICGASLLTNTRSVTAAHC 325 T I+ G +AN+ LA ++ +G T++CG L+ + +T+AHC Sbjct: 15 TSIINGFSANSFDTLSLASVITRFPDGTTNVCGGVLIAPSIVITSAHC 62 >U29380-14|AAA68746.2| 293|Caenorhabditis elegans Trypsin-like protease protein 1 protein. Length = 293 Score = 36.7 bits (81), Expect = 0.014 Identities = 26/87 (29%), Positives = 44/87 (50%) Frame = +2 Query: 185 RIVGGSAANAGAHPHLAGLVIALTNGRTSICGASLLTNTRSVTAAHCWRTRRAQARQFTL 364 R++GGS ++ + P L+ L + R CG SL+ +TAAHC+ R + +++ Sbjct: 57 RLIGGSESSPHSWPWTVQLLSRLGHHR---CGGSLIDPNFVLTAAHCFAKDR-RPTSYSV 112 Query: 365 ALGTANIFSGGTRVTTSNVQMHGSYNM 445 +G SG T+ V +H YN+ Sbjct: 113 RVGGHRSGSGSPHRVTA-VSIHPWYNI 138 >Z35719-1|CAA84800.1| 296|Caenorhabditis elegans Hypothetical protein F17C8.2 protein. Length = 296 Score = 29.5 bits (63), Expect = 2.1 Identities = 14/28 (50%), Positives = 17/28 (60%) Frame = -2 Query: 409 GDPGASGEDVSCAKSEGELTSLGSPGPP 326 G+PGA G+D K +GE G PGPP Sbjct: 201 GEPGAPGKDGE--KGKGEPGPAGPPGPP 226 >AF003384-12|AAB54236.2| 331|Caenorhabditis elegans Trypsin-like protease protein 5 protein. Length = 331 Score = 29.1 bits (62), Expect = 2.8 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 5/49 (10%) Frame = +2 Query: 200 SAANAGAHPHLAGLVIAL-TNGRTS----ICGASLLTNTRSVTAAHCWR 331 +A N G HLA + + R ICG +L+T +TAAHC++ Sbjct: 32 AAGNTGNPTHLAPWAVQIRVKARKGDFEVICGGTLITLKHVLTAAHCFQ 80 >Z99278-4|CAB16492.1| 871|Caenorhabditis elegans Hypothetical protein Y53C12B.3b protein. Length = 871 Score = 28.7 bits (61), Expect = 3.8 Identities = 13/44 (29%), Positives = 20/44 (45%) Frame = -1 Query: 257 SSVRSQVQQDGGEHQRWRQNHPQSWYRRSQRLPRRV*DSRPGGY 126 S SQ + DG +HQ + PQ Y + + + + P GY Sbjct: 351 SKRNSQNEDDGQQHQHQNEQQPQQGYHQQDFVSNPLWNQMPVGY 394 >Z99278-3|CAB16493.1| 867|Caenorhabditis elegans Hypothetical protein Y53C12B.3a protein. Length = 867 Score = 28.7 bits (61), Expect = 3.8 Identities = 13/44 (29%), Positives = 20/44 (45%) Frame = -1 Query: 257 SSVRSQVQQDGGEHQRWRQNHPQSWYRRSQRLPRRV*DSRPGGY 126 S SQ + DG +HQ + PQ Y + + + + P GY Sbjct: 351 SKRNSQNEDDGQQHQHQNEQQPQQGYHQQDFVSNPLWNQMPVGY 394 >X70836-1|CAA50184.1| 636|Caenorhabditis elegans Cytoplasmic intermediate filament(IF) protein protein. Length = 636 Score = 28.7 bits (61), Expect = 3.8 Identities = 11/29 (37%), Positives = 18/29 (62%) Frame = +2 Query: 455 HNDVAIINHNHVGFTNNIQRINLASGSNN 541 HN++A+ N + ++ +QRINL NN Sbjct: 203 HNEIALKNERSLNVSDLLQRINLLQTENN 231 >U56860-4|AAM69100.1| 1128|Caenorhabditis elegans Intermediate filament, c protein2, isoform a protein. Length = 1128 Score = 28.7 bits (61), Expect = 3.8 Identities = 11/29 (37%), Positives = 18/29 (62%) Frame = +2 Query: 455 HNDVAIINHNHVGFTNNIQRINLASGSNN 541 HN++A+ N + ++ +QRINL NN Sbjct: 829 HNEIALKNERSLNVSDLLQRINLLQTENN 857 >U56860-3|AAM69101.1| 1248|Caenorhabditis elegans Intermediate filament, c protein2, isoform b protein. Length = 1248 Score = 28.7 bits (61), Expect = 3.8 Identities = 11/29 (37%), Positives = 18/29 (62%) Frame = +2 Query: 455 HNDVAIINHNHVGFTNNIQRINLASGSNN 541 HN++A+ N + ++ +QRINL NN Sbjct: 829 HNEIALKNERSLNVSDLLQRINLLQTENN 857 >AL023844-1|CAA19526.1| 401|Caenorhabditis elegans Hypothetical protein Y48A6B.1 protein. Length = 401 Score = 28.3 bits (60), Expect = 5.0 Identities = 13/31 (41%), Positives = 19/31 (61%) Frame = -2 Query: 181 TVEVSGFLGASKTLGPGDTDLVVVVKFDGLF 89 TV V + ++ LG +TDL+ KFDGL+ Sbjct: 171 TVMVHKIVPVTEVLGMNETDLLEGAKFDGLY 201 >Z95621-2|CAB09131.1| 330|Caenorhabditis elegans Hypothetical protein ZK863.2 protein. Length = 330 Score = 27.9 bits (59), Expect = 6.6 Identities = 14/28 (50%), Positives = 16/28 (57%) Frame = -2 Query: 409 GDPGASGEDVSCAKSEGELTSLGSPGPP 326 G+PGA G+ A S GE G PGPP Sbjct: 122 GNPGADGD----AGSPGEAGGAGPPGPP 145 >Z78019-9|CAB01457.1| 330|Caenorhabditis elegans Hypothetical protein ZK863.2 protein. Length = 330 Score = 27.9 bits (59), Expect = 6.6 Identities = 14/28 (50%), Positives = 16/28 (57%) Frame = -2 Query: 409 GDPGASGEDVSCAKSEGELTSLGSPGPP 326 G+PGA G+ A S GE G PGPP Sbjct: 122 GNPGADGD----AGSPGEAGGAGPPGPP 145 >L15419-1|AAA17726.1| 308|Caenorhabditis elegans col-40 collagen protein. Length = 308 Score = 27.5 bits (58), Expect = 8.7 Identities = 11/28 (39%), Positives = 15/28 (53%) Frame = -2 Query: 409 GDPGASGEDVSCAKSEGELTSLGSPGPP 326 G+PGA G+ + G + G PGPP Sbjct: 219 GNPGAPGQVTETPGTPGPAGAAGPPGPP 246 >AF026211-4|AAB71295.1| 416|Caenorhabditis elegans Collagen protein 40 protein. Length = 416 Score = 27.5 bits (58), Expect = 8.7 Identities = 11/28 (39%), Positives = 15/28 (53%) Frame = -2 Query: 409 GDPGASGEDVSCAKSEGELTSLGSPGPP 326 G+PGA G+ + G + G PGPP Sbjct: 229 GNPGAPGQVTETPGTPGPAGAAGPPGPP 256 >AF003390-3|AAB54272.1| 1308|Caenorhabditis elegans Hypothetical protein R155.2 protein. Length = 1308 Score = 27.5 bits (58), Expect = 8.7 Identities = 12/32 (37%), Positives = 17/32 (53%) Frame = +2 Query: 425 MHGSYNMDTLHNDVAIINHNHVGFTNNIQRIN 520 +H S N TL N I+N F ++Q+IN Sbjct: 501 LHDSMNQHTLDNMSQIVNVTDAKFLESVQKIN 532 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 12,870,755 Number of Sequences: 27780 Number of extensions: 235601 Number of successful extensions: 1012 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 881 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1010 length of database: 12,740,198 effective HSP length: 79 effective length of database: 10,545,578 effective search space used: 1434198608 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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