Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12a06r
         (663 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0676 + 5765154-5765241,5765329-5765453,5765533-5765604,576...    30   1.9  
08_01_0706 - 6235817-6235988,6236028-6236338,6236421-6236627,623...    30   1.9  
04_03_0214 + 12713865-12713973,12715780-12716011,12716556-127166...    29   4.4  
03_01_0185 - 1485023-1485733                                           29   4.4  
02_05_0769 + 31616644-31616875,31616980-31617203,31617308-316174...    29   4.4  
01_06_1648 - 38897268-38897480,38897816-38897884,38899712-38900038     28   5.8  

>12_01_0676 +
           5765154-5765241,5765329-5765453,5765533-5765604,
           5765728-5765802,5765880-5765905,5766709-5766870,
           5766963-5767037,5767133-5767204,5767289-5767363,
           5767461-5767529,5767839-5767910,5768030-5768161,
           5768430-5768920,5769315-5769476,5769570-5769709,
           5769818-5770037,5770398-5770633,5771560-5772051
          Length = 927

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 5/37 (13%)
 Frame = -2

Query: 137 GHQQLINTLSPGAVLQSEIESWP----HW-LDNARKV 42
           GH  LI    PG +LQ E+E WP    HW L+ A K+
Sbjct: 85  GHSVLIRIAVPGLILQQELE-WPPSFNHWNLEQAPKL 120


>08_01_0706 -
           6235817-6235988,6236028-6236338,6236421-6236627,
           6236718-6236889,6236994-6237249,6238015-6238073,
           6238693-6238782,6238869-6239013,6239598-6239712,
           6240690-6240701
          Length = 512

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 25/104 (24%), Positives = 41/104 (39%), Gaps = 6/104 (5%)
 Frame = -2

Query: 359 GYSFV---AGGNGKIYEGAGWNHIGAHTLHYNNISIGIGFIG--DFREKLPTQQALQAVQ 195
           GYSFV    GG G+I+ G  W         Y ++S  I   G  D+ +    Q A     
Sbjct: 387 GYSFVNCSIGGTGRIWLGRAWRPYSTVVFAYTSMSDIIASEGWNDWNDPSRDQYASSLYS 446

Query: 194 -DFLACGVENNLLTEDYHVVGHQQLINTLSPGAVLQSEIESWPH 66
              + C  +  +   +Y   G    ++   P A   S+++  P+
Sbjct: 447 VSIVTCMTKRTVFYGEYRCTGDGANLSDRVPYAQKLSDVQVLPY 490


>04_03_0214 +
           12713865-12713973,12715780-12716011,12716556-12716635,
           12716930-12717083,12717213-12717291,12717654-12717738,
           12718420-12718466,12720123-12720281
          Length = 314

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 18/58 (31%), Positives = 30/58 (51%)
 Frame = -2

Query: 197 QDFLACGVENNLLTEDYHVVGHQQLINTLSPGAVLQSEIESWPHWLDNARKVLG*YFI 24
           Q  LA  + +NLL+        + ++N+L PGAV  + +  W   L  A + +G YF+
Sbjct: 201 QSKLANILHSNLLSSHLKEQDAKVIVNSLHPGAVATNILHHWCP-LYGAIRAIGKYFV 257


>03_01_0185 - 1485023-1485733
          Length = 236

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -2

Query: 416 LSVNSLRQHHMLLAGFKDLGYSFVAG 339
           LS+NS R HH++L  F D+     AG
Sbjct: 187 LSLNSSRHHHLILRAFADVCEELFAG 212


>02_05_0769 +
           31616644-31616875,31616980-31617203,31617308-31617426,
           31617528-31617684,31617928-31618029,31618111-31618230,
           31618761-31618855,31619900-31619984,31620090-31620180,
           31620534-31620618,31620702-31620806,31621019-31621894,
           31622016-31622124,31622266-31622414,31622518-31622737
          Length = 922

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 20/83 (24%), Positives = 34/83 (40%)
 Frame = +1

Query: 391 CCRREFTLSKHSSSVKQSLDTVCCITTKSIGLFRGCLRRDSVPLHSVMGISPHSDAKVDN 570
           C    F   K +S V+  L   CC  T+ +GL        SV   + + +SP S      
Sbjct: 17  CTGANFGFEKRTSKVRFVLVGRCCSGTRKLGLVCASNSHSSVMEPAQLPLSPESGNTPKK 76

Query: 571 PAHVATMIKNRILFIVNKRSAFT 639
            +  A ++      + N+++ FT
Sbjct: 77  SSESALILIRHGESLWNEKNLFT 99


>01_06_1648 - 38897268-38897480,38897816-38897884,38899712-38900038
          Length = 202

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -2

Query: 623 LFTMNSILFLIIVATCAGLSTFASECGEI 537
           LF   ++L ++ V  CAGL+ F  E G+I
Sbjct: 163 LFVPVTVLVIVAVCACAGLAIFCFEEGQI 191


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,856,104
Number of Sequences: 37544
Number of extensions: 421591
Number of successful extensions: 1057
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1038
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1057
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1667659452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)