Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12a06r
         (663 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF100673-5|AAC69000.1| 1084|Caenorhabditis elegans Hypothetical ...    34   0.078
Z81500-6|CAB04099.1|  221|Caenorhabditis elegans Hypothetical pr...    29   2.2  
U41110-1|AAA82415.1|  506|Caenorhabditis elegans Hypothetical pr...    29   3.9  
Z49888-1|CAA90064.1| 3498|Caenorhabditis elegans Hypothetical pr...    28   5.1  
AC024770-8|AAF59486.1|  740|Caenorhabditis elegans Hypothetical ...    28   6.8  
Z92827-2|CAB07327.2|  394|Caenorhabditis elegans Hypothetical pr...    27   9.0  
Z82284-2|CAB05290.1|  402|Caenorhabditis elegans Hypothetical pr...    27   9.0  
U41528-5|AAM51514.2|  389|Caenorhabditis elegans Hypothetical pr...    27   9.0  
DQ139948-1|ABA29469.1|  381|Caenorhabditis elegans putative prot...    27   9.0  

>AF100673-5|AAC69000.1| 1084|Caenorhabditis elegans Hypothetical
           protein Y66H1B.3 protein.
          Length = 1084

 Score = 34.3 bits (75), Expect = 0.078
 Identities = 32/101 (31%), Positives = 51/101 (50%), Gaps = 7/101 (6%)
 Frame = -2

Query: 335 NGKIYEGAGWNHIGAHTLHYNNISIGIGFI------GDFREKLPTQQALQAVQDFLACGV 174
           N K+  G  W  I    LHY   SI +G+I      GD +E+ P Q+ L  +++ L  G+
Sbjct: 116 NKKLILGLVWTLI----LHY---SISMGWIQEKREDGDNKEETPKQKLLNWIRNRLP-GM 167

Query: 173 ENNLLTEDYHV-VGHQQLINTLSPGAVLQSEIESWPHWLDN 54
             +  T D++  V    L+N+++PGA     +E W +W  N
Sbjct: 168 PISNFTSDWNDGVALGALVNSMAPGA-----LEDWENWSPN 203


>Z81500-6|CAB04099.1|  221|Caenorhabditis elegans Hypothetical
           protein F11D11.8 protein.
          Length = 221

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 12/61 (19%)
 Frame = -2

Query: 446 NDCFTDEECLLS-VNSLRQHH-------MLLAGFKDLGYSFVAGGNGKIYE----GAGWN 303
           ++CF D ECLL+  NS   H+          A +KD+ YS V   +G IY      AGW+
Sbjct: 48  DECFEDSECLLAFFNSACFHYYTELPDATCPASYKDIKYS-VTSDSGDIYSWKKTDAGWS 106

Query: 302 H 300
           +
Sbjct: 107 Y 107


>U41110-1|AAA82415.1|  506|Caenorhabditis elegans Hypothetical
           protein ZK682.2 protein.
          Length = 506

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = -2

Query: 605 ILFLIIVATCAGLSTFASECGEIPITEWSGTESR 504
           I+F +I A C     F   CG   + +W  T S+
Sbjct: 447 IVFAVIAAICVVTGIFFQCCGTASLQDWDSTHSK 480


>Z49888-1|CAA90064.1| 3498|Caenorhabditis elegans Hypothetical protein
            F47A4.2 protein.
          Length = 3498

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +1

Query: 37   PSTFRALSSQWGQLSISDCSTAPGLSVFINC 129
            P  F+ +S Q   + ISDCST   L+ FI C
Sbjct: 1489 PYPFKEMSQQ---IDISDCSTHYSLTTFITC 1516


>AC024770-8|AAF59486.1|  740|Caenorhabditis elegans Hypothetical
           protein Y39H10A.2 protein.
          Length = 740

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = -2

Query: 383 LLAGFKDLGYSFVAGGNGKIYEGAGWNHIGAHTLHYN 273
           +L+GF D+   F      +  EG GW    A + H N
Sbjct: 247 ILSGFSDIFQKFQLNDKTRKEEGFGWKLFSAFSFHRN 283


>Z92827-2|CAB07327.2|  394|Caenorhabditis elegans Hypothetical
           protein C29F7.2 protein.
          Length = 394

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -1

Query: 165 LID*RLPRRWSPAVDKHAKSWSCTAIRNRK 76
           +ID ++  R SP  D H    +CT++ NRK
Sbjct: 273 IIDWQITHRGSPMEDFHHIMSTCTSVENRK 302


>Z82284-2|CAB05290.1|  402|Caenorhabditis elegans Hypothetical
           protein T27E7.3 protein.
          Length = 402

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = -3

Query: 376 LGSRTWAIHSWLEATEKFMKERDGTISVLTHCTTIIYP*GSVSLET 239
           +G + +A  S ++        RD  +S +  C ++IY  GS+S+ET
Sbjct: 213 IGRKQYATKSTIKTLYICCIIRDYVLSPVVACVSVIYFIGSISIET 258


>U41528-5|AAM51514.2|  389|Caenorhabditis elegans Hypothetical
           protein C15C7.7 protein.
          Length = 389

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +3

Query: 243 SNETDPYGYIIVVQCV 290
           SNETDP GYI+   C+
Sbjct: 23  SNETDPNGYIVFCPCM 38


>DQ139948-1|ABA29469.1|  381|Caenorhabditis elegans putative protein
           O-fucosyltransferase1 protein.
          Length = 381

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +3

Query: 243 SNETDPYGYIIVVQCV 290
           SNETDP GYI+   C+
Sbjct: 23  SNETDPNGYIVFCPCM 38


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,106,161
Number of Sequences: 27780
Number of extensions: 352921
Number of successful extensions: 863
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 847
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 863
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1486926498
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)