Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV12a06f
(625 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_32751| Best HMM Match : Pentapeptide_2 (HMM E-Value=1.8) 31 1.0
SB_33579| Best HMM Match : Laminin_G_2 (HMM E-Value=3.2e-34) 29 2.3
SB_33399| Best HMM Match : Ank (HMM E-Value=0) 29 3.1
SB_53822| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_17765| Best HMM Match : 7tm_1 (HMM E-Value=7.6e-16) 29 4.1
SB_30999| Best HMM Match : DUF1233 (HMM E-Value=7.1) 28 5.4
SB_48953| Best HMM Match : NIF3 (HMM E-Value=1.7e-12) 28 5.4
SB_41075| Best HMM Match : RVT_1 (HMM E-Value=2.1e-30) 27 9.4
>SB_32751| Best HMM Match : Pentapeptide_2 (HMM E-Value=1.8)
Length = 127
Score = 30.7 bits (66), Expect = 1.0
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = +2
Query: 290 GFKDLGYSFVAGGNGKIYEGAGWNHIGAHTLHYNNISIG-IGF 415
G+ D+GY+ + G N Y G+N IG + + YN+I IG+
Sbjct: 47 GYNDIGYNDI-GYNDIGYNDIGYNDIGYNDIGYNDIGYNDIGY 88
Score = 30.7 bits (66), Expect = 1.0
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = +2
Query: 290 GFKDLGYSFVAGGNGKIYEGAGWNHIGAHTLHYNNISIG-IGF 415
G+ D+GY+ + G N Y G+N IG + + YN+I IG+
Sbjct: 57 GYNDIGYNDI-GYNDIGYNDIGYNDIGYNDIGYNDIGYNDIGY 98
Score = 30.7 bits (66), Expect = 1.0
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = +2
Query: 290 GFKDLGYSFVAGGNGKIYEGAGWNHIGAHTLHYNNISIG-IGF 415
G+ D+GY+ + G N Y G+N IG + + YN+I IG+
Sbjct: 67 GYNDIGYNDI-GYNDIGYNDIGYNDIGYNDIGYNDIGYNDIGY 108
Score = 30.7 bits (66), Expect = 1.0
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = +2
Query: 290 GFKDLGYSFVAGGNGKIYEGAGWNHIGAHTLHYNNISIG-IGF 415
G+ D+GY+ + G N Y G+N IG + + YN+I IG+
Sbjct: 77 GYNDIGYNDI-GYNDIGYNDIGYNDIGYNDIGYNDIGYNDIGY 118
Score = 30.3 bits (65), Expect = 1.3
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +2
Query: 290 GFKDLGYSFVAGGNGKIYEGAGWNHIGAHTLHYNNI 397
G+ D+GY+ + G N Y G+N IG + + YN+I
Sbjct: 87 GYNDIGYNDI-GYNDIGYNDIGYNDIGYNDIGYNDI 121
Score = 30.3 bits (65), Expect = 1.3
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +2
Query: 290 GFKDLGYSFVAGGNGKIYEGAGWNHIGAHTLHYNNI 397
G+ D+GY+ + G N Y G+N IG + + YN+I
Sbjct: 92 GYNDIGYNDI-GYNDIGYNDIGYNDIGYNDIGYNDI 126
Score = 28.3 bits (60), Expect = 5.4
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 5/65 (7%)
Frame = +2
Query: 236 EECLLSVNSLRQHHMLLAGFKDLGYSFVA----GGNGKIYEGAGWNHIGAHTLHYNNISI 403
EE +S+ + H+ + + D+GY+ + G N Y G+N IG + + YN+I
Sbjct: 15 EERYISIGHISIGHISIE-YNDIGYNDIEYNDIGYNDIGYNDIGYNDIGYNDIGYNDIGY 73
Query: 404 G-IGF 415
IG+
Sbjct: 74 NDIGY 78
>SB_33579| Best HMM Match : Laminin_G_2 (HMM E-Value=3.2e-34)
Length = 1071
Score = 29.5 bits (63), Expect = 2.3
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +3
Query: 285 WLGSRTWAIHSWLEATEKFMKERDGTISVLTHCTTI 392
W+ SR+ ++HSW++ T K M + + + T C TI
Sbjct: 534 WI-SRSGSLHSWVDGTIKNMDQPESQQTSQTDCDTI 568
>SB_33399| Best HMM Match : Ank (HMM E-Value=0)
Length = 1416
Score = 29.1 bits (62), Expect = 3.1
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Frame = -2
Query: 255 TLSKHSSSVKQ--SLDTVCCITTKSIGLFRGCLRRDSVPLHSVMGISP 118
T+S SS+ Q ++D++ + + IG R C R + PL S+ GISP
Sbjct: 1245 TISPIGSSLAQCSTVDSMDKPSLRPIGTERACRRATASPLPSMPGISP 1292
>SB_53822| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 258
Score = 28.7 bits (61), Expect = 4.1
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = -1
Query: 364 MVPSRSFINFSVASSHE*IAQVLEPSQKHMMLS 266
+ PS +F +F + HE + ++ P+ KH+ LS
Sbjct: 31 LYPSINFESFHIPFDHEEVKDLIPPTAKHVFLS 63
>SB_17765| Best HMM Match : 7tm_1 (HMM E-Value=7.6e-16)
Length = 424
Score = 28.7 bits (61), Expect = 4.1
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +2
Query: 302 LGYSFVAGGNGKIYEGAGWNHIGAHTLHYNNISIGIGFI 418
+G+S G K+ G W A TL YN + + +GF+
Sbjct: 159 VGWSKFVPGAAKVSCGPDWETQNASTLSYNIVLLIVGFV 197
>SB_30999| Best HMM Match : DUF1233 (HMM E-Value=7.1)
Length = 142
Score = 28.3 bits (60), Expect = 5.4
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = +3
Query: 285 WLGSRTWAIHSWLEATEKFMKERDGTISVLTHCTTI 392
W+ SR+ ++HSW++ T K M + + + T C T+
Sbjct: 51 WI-SRSGSLHSWVDGTIKNMDQPESQQTSQTDCDTM 85
>SB_48953| Best HMM Match : NIF3 (HMM E-Value=1.7e-12)
Length = 288
Score = 28.3 bits (60), Expect = 5.4
Identities = 15/50 (30%), Positives = 24/50 (48%)
Frame = +2
Query: 338 IYEGAGWNHIGAHTLHYNNISIGIGFIGDFREKLPTQQALQAVQDFLACG 487
IYE + + H N IG+G IG+F + + L V++ + CG
Sbjct: 144 IYEEVAYEIYSLNNKHQN---IGLGMIGEFETPMNETEFLAFVKNKMQCG 190
>SB_41075| Best HMM Match : RVT_1 (HMM E-Value=2.1e-30)
Length = 1152
Score = 27.5 bits (58), Expect = 9.4
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -2
Query: 501 KLFSTPQAKKSWTACSAC 448
KLF TP++K+S T C C
Sbjct: 204 KLFKTPESKESKTKCGRC 221
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,346,248
Number of Sequences: 59808
Number of extensions: 429305
Number of successful extensions: 1363
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1217
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1357
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1548368000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -