Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12a05r
         (730 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0403 - 17635530-17635578,17635737-17635820,17636110-176362...    30   2.2  
02_02_0549 + 11410129-11412180                                         29   3.8  
04_01_0422 + 5573833-5574647,5575577-5575692,5576922-5577130,557...    29   5.0  
12_02_0367 - 18053979-18054618,18055844-18055988,18056049-18056649     28   8.7  
07_03_1704 + 28839628-28839908,28840010-28840123,28840416-288407...    28   8.7  

>10_08_0403 -
           17635530-17635578,17635737-17635820,17636110-17636219,
           17637507-17637638,17638497-17638576,17638877-17639008,
           17639534-17639648,17640244-17640286,17640359-17640493,
           17641347-17641414,17641473-17641478
          Length = 317

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 22/54 (40%), Positives = 27/54 (50%), Gaps = 7/54 (12%)
 Frame = -1

Query: 358 LGLGCRLREDLRCC--FGSQQ-----PTKTPSEPPGHHQRRLRPHVRKLCDHWL 218
           LGLG  LR  L CC  +GS++     P      P G+H  RL P V  LC  W+
Sbjct: 128 LGLGTALRLALECCQEWGSRRSMPRLPMDGSMAPSGYHPVRLWPAV--LCLGWV 179


>02_02_0549 + 11410129-11412180
          Length = 683

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 18/48 (37%), Positives = 23/48 (47%)
 Frame = -2

Query: 549 LAFGTANIFSGGTRVTTSSVHLHGSYNMNNLNNDVAIINHNHVGFNNN 406
           LA     +F+G   V ++S HL         N D   IN+NHVG N N
Sbjct: 129 LANNYMGLFNGTGSVGSASNHLFAVELDTIQNPDFRDINNNHVGININ 176


>04_01_0422 + 5573833-5574647,5575577-5575692,5576922-5577130,
            5579676-5579795,5581616-5581744,5581828-5581953,
            5582945-5583000,5583084-5583183,5585155-5585272,
            5585374-5585583,5585902-5586226,5587094-5587187,
            5588021-5588129,5588246-5588514,5589153-5589280,
            5589983-5590217,5590858-5591046,5591326-5591609,
            5591698-5591890,5592040-5592207,5592429-5592514,
            5594391-5594550
          Length = 1412

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
 Frame = -2

Query: 717  VVLPPTLVLNPHLAGLVIALTNG--RTSICGASLLTNTRSV 601
            +++PP  +L+P LAGL    + G  R+S+     L NT SV
Sbjct: 1288 LLIPPLALLSPFLAGLNALFSRGPKRSSVTRIFALWNTTSV 1328


>12_02_0367 - 18053979-18054618,18055844-18055988,18056049-18056649
          Length = 461

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -2

Query: 636 CGASLLTNTRSVTAAHC 586
           CG+ ++T TRSVT A C
Sbjct: 275 CGSRIITTTRSVTVASC 291


>07_03_1704 +
           28839628-28839908,28840010-28840123,28840416-28840769,
           28841072-28841268,28841496-28841587,28841700-28842027,
           28842328-28842535,28843555-28843669,28844023-28844190,
           28844804-28845476,28845552-28845758,28845911-28847001
          Length = 1275

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +1

Query: 493 TGGGDPGAAGEDVSCTKSEGELTSL 567
           +GGG+PG  G++ S TK+ G +  L
Sbjct: 438 SGGGNPGMMGQNDSSTKTVGNMLHL 462


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.315    0.133    0.398 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,532,201
Number of Sequences: 37544
Number of extensions: 283774
Number of successful extensions: 821
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 807
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 821
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)