Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12a05f
         (648 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g30180.1 68417.m04291 expressed protein                             30   1.2  
At4g13800.1 68417.m02139 permease-related contains 9 predicted t...    29   2.0  
At1g68050.1 68414.m07774 F-box family protein (FKF1) / adagio 3 ...    28   6.1  
At5g67370.1 68418.m08495 expressed protein similar to unknown pr...    27   8.1  
At5g57180.2 68418.m07143 expressed protein ; supporting cDNA gi|...    27   8.1  
At5g57180.1 68418.m07142 expressed protein ; supporting cDNA gi|...    27   8.1  
At5g03270.1 68418.m00276 expressed protein contains Pfam profile...    27   8.1  
At2g41130.1 68415.m05080 basic helix-loop-helix (bHLH) family pr...    27   8.1  

>At4g30180.1 68417.m04291 expressed protein 
          Length = 158

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = +3

Query: 45  SSQQY*WRWRPWSWQKRPSNLTTTTRSVSPGLRVLDAPRK 164
           S+Q++ W           SN TTTT S S G+R+L+ P K
Sbjct: 62  SAQEFAWSRFLLQKLSSSSNPTTTTSSSSDGIRILERPDK 101


>At4g13800.1 68417.m02139 permease-related contains 9 predicted
           transmembrane domains; contains Pfam PF05653: Protein of
           unknown function (DUF803); identified as COG0697,
           Permeases of the drug/metabolite transporter (DMT)
           superfamily
          Length = 336

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = -3

Query: 244 HKSSKMGVSTSVGGRTTHNPGTVEVSGFLGASKT 143
           HK+  MG STS+ G T+H+P    V    G+S++
Sbjct: 294 HKTKDMGNSTSLRGSTSHSPRDTPVFINSGSSRS 327


>At1g68050.1 68414.m07774 F-box family protein (FKF1) / adagio 3
           (ADO3) E3 ubiquitin ligase SCF complex F-box subunit;
           identical to FKF1 GI:6960305 and Adagio 3 GI:13487072
           from [Arabidopsis thaliana]; contains Pfam profiles
           PF01344: Kelch motif, PF00785: PAC motif and PF00646:
           F-box domain; contains TIGRfam profile TIGR00229: PAS
           domain S-boxidentical to cDNA Adagio 3 (ADO3)
           GI:13487071
          Length = 619

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = +2

Query: 326 WRTRNAQARQFTLAFGTANIFSGGTRVTTSSVHLHGSYNMNNLN 457
           WR  N   +   LA+G +    GGTRV     H    + +N L+
Sbjct: 564 WRILNVPGKPPKLAWGHSTCVVGGTRVLVLGGHTGEEWILNELH 607


>At5g67370.1 68418.m08495 expressed protein similar to unknown
           protein (gb|AAC18972.1)
          Length = 327

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +1

Query: 181 YQDCGWFCRQRWCSPPSCWTCDR 249
           Y++ GW+  Q W  PP     DR
Sbjct: 185 YEESGWYDGQMWVKPPEVLARDR 207


>At5g57180.2 68418.m07143 expressed protein ; supporting cDNA
           gi|13991645|gb|AF359387.1|AF359387
          Length = 435

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +3

Query: 96  PSNLTTTTRSVSPGLRVLDAPRKPL 170
           PS+ TTTTR+ SP   + ++   PL
Sbjct: 27  PSSSTTTTRATSPSSTISESSNSPL 51


>At5g57180.1 68418.m07142 expressed protein ; supporting cDNA
           gi|13991645|gb|AF359387.1|AF359387
          Length = 424

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +3

Query: 96  PSNLTTTTRSVSPGLRVLDAPRKPL 170
           PS+ TTTTR+ SP   + ++   PL
Sbjct: 27  PSSSTTTTRATSPSSTISESSNSPL 51


>At5g03270.1 68418.m00276 expressed protein contains Pfam profile
           PF03641: decarboxylase family protein
          Length = 229

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 21/70 (30%), Positives = 32/70 (45%)
 Frame = +2

Query: 275 CGASLLTNTRSVTAAHCWRTRNAQARQFTLAFGTANIFSGGTRVTTSSVHLHGSYNMNNL 454
           CG+S   N  S   A     +    R+  L +G  +I  G   + + +VH  G +N NN 
Sbjct: 25  CGSSN-GNKASYQDAAIDLAKELVMRKIDLVYGGGSI--GLMGLVSQAVHDGGRHNNNNN 81

Query: 455 NNDVAIINHN 484
            ND A+  H+
Sbjct: 82  GNDDALFCHS 91


>At2g41130.1 68415.m05080 basic helix-loop-helix (bHLH) family
           protein contains Pfam profile: PF00010 helix-loop-helix
           DNA-binding domain
          Length = 253

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
 Frame = -3

Query: 259 IRECDHKSSKMGVSTSVGGRTTH-NPGTVEVSGFLGASKTLSPGDTDLVVVVKFDGLFCH 83
           +  C+ K+ K  +   V  R       T+E S    + +TL P +TD + V+ F      
Sbjct: 92  VLSCNSKTDKATLLAKVVQRVRELKQQTLETSD---SDQTLLPSETDEISVLHFGDYSND 148

Query: 82  DHGRQRHQYCCED 44
            H   +   CCED
Sbjct: 149 GHIIFKASLCCED 161


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,667,239
Number of Sequences: 28952
Number of extensions: 205214
Number of successful extensions: 678
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 662
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 678
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1344285648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)