Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12a04f
         (609 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3A11.07 |||NADH dehydrogenase|Schizosaccharomyces pombe|chr ...    29   0.40 
SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|ch...    27   1.6  
SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein Usp104|Schi...    27   2.1  
SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|...    26   3.7  
SPBC13E7.02 |cwf24||GCN5-related N acetyltransferase|Schizosacch...    26   3.7  
SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|ch...    26   5.0  
SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo...    25   8.7  
SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pomb...    25   8.7  
SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||M...    25   8.7  

>SPAC3A11.07 |||NADH dehydrogenase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 551

 Score = 29.5 bits (63), Expect = 0.40
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = +3

Query: 201 PTTTTFQLLPVSMENSTILHTVALSLDLPVAVSPVKYLMFTLLL 332
           P+  T  +L      ++IL T+  SL   + VSP  Y +FT LL
Sbjct: 89  PSKKTLVVLGAGWGATSILRTIDTSLFNVIVVSPRNYFLFTSLL 132


>SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 687

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -1

Query: 96  RSLAVQLQTAASTATAKVRTETIVPIESN 10
           R L +  +  A +A+ K+ TE I+P ESN
Sbjct: 605 RQLHIDFENPAVSASEKLSTEEIIPQESN 633


>SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein
           Usp104|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 695

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 18/61 (29%), Positives = 25/61 (40%)
 Frame = -3

Query: 604 SHDAIMTLVLFPAVFFVGHNEFELVEVAVRYTAALNGSSPSEQINKNTLGYYDTLLDNST 425
           S+D I  L+     F   H+E   +    +Y   L      E+  +N  GYYD   D S 
Sbjct: 568 SYDEIRPLISILPEFAALHSEEHRMAAFDKYIRRLREKRELEKQYQNRRGYYDVGKDESY 627

Query: 424 L 422
           L
Sbjct: 628 L 628


>SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 828

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
 Frame = +3

Query: 177 NSALVLFSPTTTT-FQLLPVSMENSTI--LHTVALSLDLPVAVSPVKYLMFTLLLTIPNS 347
           N  L+ F  T T    LLP++     I  ++TV LSL +    S V+ L+F +L  +   
Sbjct: 290 NLILISFLSTKTDKIVLLPINALKDLIQRVYTVQLSLPVKSVESSVQALLFMVLPHLHTL 349

Query: 348 LRRITTRM 371
           +  +T ++
Sbjct: 350 VNELTLKL 357


>SPBC13E7.02 |cwf24||GCN5-related N
           acetyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 533

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -3

Query: 322 VNIRYFTGLTATGRSSDNATVCRIVEFSME 233
           +N+ Y + L+ATG S +  TV  I E + E
Sbjct: 94  INVEYQSNLSATGESVNTTTVSAINEDTRE 123


>SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 546

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +1

Query: 211 LPFNCYLFPWRILRSCIPSHYRWIFP 288
           LP + + F W    +C P H  WI P
Sbjct: 426 LPISMFWFAW----TCYPHHIHWIVP 447


>SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1616

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -2

Query: 398  WHVLLVRCSHPCRNSPQRIRDG*QQSEHKIFH 303
            W +LLV  +  C NS   +R+G  Q   +IF+
Sbjct: 1024 WIMLLVHLADLCENSWASVRNGAAQILFRIFN 1055


>SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1066

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 14/36 (38%), Positives = 16/36 (44%)
 Frame = -1

Query: 522 PSDTLPP*TVVPHPSRSTKIPWGITTPCWIIAPCWM 415
           PSD     T VP  + S   PW  TTP     P W+
Sbjct: 21  PSDAQSSPTFVPSANPSLTTPWLQTTPS-ANRPTWL 55


>SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1317

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 23/92 (25%), Positives = 38/92 (41%), Gaps = 2/92 (2%)
 Frame = -3

Query: 511  TAALNGSSPSEQINKNTLGYYDTLLDNSTLLDVWAEVDGM-CYSYDAHIL-VVILLREFG 338
            T  + G  P     K   GYY+T+   S  +D      G+  +  +  I  + +L R + 
Sbjct: 1118 TFGIGGKDPETGEVKPGFGYYETICGGSGAIDGLDGTSGVHTHMTNTRITDLEVLERRYP 1177

Query: 337  MVNSKVNIRYFTGLTATGRSSDNATVCRIVEF 242
            ++  K  IR  +G    G+      V R +EF
Sbjct: 1178 VILRKFIIRENSG--GAGKYKGGDGVIRDIEF 1207


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,643,237
Number of Sequences: 5004
Number of extensions: 57605
Number of successful extensions: 183
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)