Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12a04f
         (609 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g18640.2 68414.m02324 3-phosphoserine phosphatase (PSP) nearl...    32   0.34 
At1g18640.1 68414.m02323 3-phosphoserine phosphatase (PSP) nearl...    32   0.34 
At1g30450.3 68414.m03722 cation-chloride cotransporter, putative...    30   1.0  
At1g30450.2 68414.m03721 cation-chloride cotransporter, putative...    30   1.0  
At1g30450.1 68414.m03720 cation-chloride cotransporter, putative...    30   1.0  
At4g16080.1 68417.m02438 hypothetical protein contains Pfam prof...    29   3.2  
At2g01050.1 68415.m00010 hypothetical protein                          28   4.2  
At4g11530.1 68417.m01850 protein kinase family protein contains ...    28   5.6  
At1g49740.1 68414.m05578 expressed protein similar to MAP3K-like...    28   5.6  
At4g33600.1 68417.m04773 expressed protein                             27   7.4  
At4g26965.1 68417.m03880 NADH:ubiquinone oxidoreductase family p...    27   9.7  
At4g11510.1 68417.m01849 expressed protein  ; expression support...    27   9.7  

>At1g18640.2 68414.m02324 3-phosphoserine phosphatase (PSP) nearly
           identical to 3-phosphoserine phosphatase GI:3759177 from
           [Arabidopsis thaliana]
          Length = 295

 Score = 31.9 bits (69), Expect = 0.34
 Identities = 10/35 (28%), Positives = 22/35 (62%)
 Frame = -3

Query: 466 NTLGYYDTLLDNSTLLDVWAEVDGMCYSYDAHILV 362
           +TLG+   ++ +  +LD+W  V+ +C+  D+ + V
Sbjct: 62  STLGHEGNIVPSKEILDLWRSVEAVCFDVDSTVCV 96


>At1g18640.1 68414.m02323 3-phosphoserine phosphatase (PSP) nearly
           identical to 3-phosphoserine phosphatase GI:3759177 from
           [Arabidopsis thaliana]
          Length = 295

 Score = 31.9 bits (69), Expect = 0.34
 Identities = 10/35 (28%), Positives = 22/35 (62%)
 Frame = -3

Query: 466 NTLGYYDTLLDNSTLLDVWAEVDGMCYSYDAHILV 362
           +TLG+   ++ +  +LD+W  V+ +C+  D+ + V
Sbjct: 62  STLGHEGNIVPSKEILDLWRSVEAVCFDVDSTVCV 96


>At1g30450.3 68414.m03722 cation-chloride cotransporter, putative
           similar to cation-chloride co-transporter GB:AAC49874
           GI:2582381 from [Nicotiana tabacum], Cation-Chloride
           Cotransporter (CCC) Family Member, PMID:11500563
          Length = 975

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -2

Query: 221 LKGSGSW*EQYQRTVGTIDSRWV 153
           +KG   W  +YQR  GTID  W+
Sbjct: 767 IKGLDEWPNEYQRQYGTIDLYWI 789


>At1g30450.2 68414.m03721 cation-chloride cotransporter, putative
           similar to cation-chloride co-transporter GB:AAC49874
           GI:2582381 from [Nicotiana tabacum], Cation-Chloride
           Cotransporter (CCC) Family Member, PMID:11500563
          Length = 975

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -2

Query: 221 LKGSGSW*EQYQRTVGTIDSRWV 153
           +KG   W  +YQR  GTID  W+
Sbjct: 767 IKGLDEWPNEYQRQYGTIDLYWI 789


>At1g30450.1 68414.m03720 cation-chloride cotransporter, putative
           similar to cation-chloride co-transporter GB:AAC49874
           GI:2582381 from [Nicotiana tabacum], Cation-Chloride
           Cotransporter (CCC) Family Member, PMID:11500563
          Length = 975

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -2

Query: 221 LKGSGSW*EQYQRTVGTIDSRWV 153
           +KG   W  +YQR  GTID  W+
Sbjct: 767 IKGLDEWPNEYQRQYGTIDLYWI 789


>At4g16080.1 68417.m02438 hypothetical protein contains Pfam profile
           PF03478: Protein of unknown function (DUF295)
          Length = 379

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -1

Query: 585 PLYCSLQFSLLVTMSSSLWRLPSDTL 508
           P Y  L FS+LVT  +SLW L  D +
Sbjct: 212 PQYHELNFSILVTGHTSLWSLLQDNV 237


>At2g01050.1 68415.m00010 hypothetical protein
          Length = 515

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 26/90 (28%), Positives = 39/90 (43%), Gaps = 5/90 (5%)
 Frame = -3

Query: 592 IMTLVLFPAVFFVGHNEFELVEVAVRYTAALNGSSPSEQINKNTL-----GYYDTLLDNS 428
           +MT++  P  FF+    FEL E    Y AAL G  P   +    L       +D L D+ 
Sbjct: 108 VMTVMDLPRQFFM--IRFELEE---EYMAALTGG-PWRVLGNYLLVQDWSSRFDPLRDDI 161

Query: 427 TLLDVWAEVDGMCYSYDAHILVVILLREFG 338
               VW  +  + Y+Y    L++ + R  G
Sbjct: 162 VTTPVWVRLSNIPYNYYHRCLLMEIARGLG 191


>At4g11530.1 68417.m01850 protein kinase family protein contains
           Pfam PF00069: Protein kinase domain
          Length = 931

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
 Frame = +2

Query: 158 ILNQWFQQCAGIVLTNYHYLSTATCFHGEF-----YDPAYRRIIA 277
           +LN  F       L  + Y+ST TCF+G F     YD   RRI++
Sbjct: 2   MLNTLFLPIFLFFLITFDYVSTQTCFNGYFKPNGTYDLNRRRILS 46


>At1g49740.1 68414.m05578 expressed protein similar to MAP3K-like
           protein kinase GB:CAB16796 GI:4006878 from [Arabidopsis
           thaliana]
          Length = 359

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 7/77 (9%)
 Frame = -3

Query: 550 HNEF-ELVEVAVRYTAAL----NGSSPSEQINKNTLGYYDTLLDNSTLLDVWA--EVDGM 392
           HN F  L EV+   +A L       S + Q+N    G+   + D     D+W     DG 
Sbjct: 84  HNSFARLGEVSRTGSAILAPTNQQDSITSQLNNGVRGFMLDMYDFQN--DIWLCHSFDGT 141

Query: 391 CYSYDAHILVVILLREF 341
           C+++ A    + +LREF
Sbjct: 142 CFNFTAFQPAINILREF 158


>At4g33600.1 68417.m04773 expressed protein 
          Length = 453

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 13/31 (41%), Positives = 15/31 (48%)
 Frame = +1

Query: 160 LESMVPTVRWYCSHQLPLPFNCYLFPWRILR 252
           L +MVP V W   HQ   P    L+ W  LR
Sbjct: 183 LSAMVPFVAWSLRHQCENPQRWVLYHWGELR 213


>At4g26965.1 68417.m03880 NADH:ubiquinone oxidoreductase family
           protein contains Pfam profile PF05071: NADH:ubiquinone
           oxidoreductase 17.2 kD subunit
          Length = 184

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -2

Query: 599 RRDHDPCTVPCSFLCW 552
           RR+ DP ++P  ++CW
Sbjct: 47  RREEDPTSIPVEWICW 62


>At4g11510.1 68417.m01849 expressed protein  ; expression supported
           by MPSS
          Length = 85

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = +1

Query: 352 GELRQGCEHRTSNTCHPLRPKHPAGCYYPTRCR 450
           G+ + GC+H       P  P H  GC    RCR
Sbjct: 42  GDRQPGCDHGNCPPDQPANPYH-RGCEKSKRCR 73


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,084,721
Number of Sequences: 28952
Number of extensions: 313239
Number of successful extensions: 827
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 806
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 827
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1216725696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)