Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12a03r
         (563 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC428.08c |clr4||histone H3 methyltransferase Clr4|Schizosacch...    27   1.4  
SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo...    27   1.9  
SPCC663.11 |||ww domain binding protein 11 |Schizosaccharomyces ...    26   3.3  
SPAC4F10.09c |||ribosome biogenesis protein Noc1 |Schizosaccharo...    26   4.4  
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    26   4.4  
SPCC191.02c ||SPCC417.14c|acetyl-CoA ligase |Schizosaccharomyces...    25   7.7  
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar...    25   7.7  

>SPBC428.08c |clr4||histone H3 methyltransferase
           Clr4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 490

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = -1

Query: 176 RWPSHTALASTWSPLQDLSAPSTVLS 99
           RW ++++ + TW P ++LS  S VL+
Sbjct: 30  RWLNYSSRSDTWEPPENLSGCSAVLA 55


>SPCC1739.11c |cdc11||SIN component scaffold protein
           Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1045

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = -2

Query: 157 RLPVRGRHSRIFLPHRPSSLR 95
           R+P  GR S IFLP + S LR
Sbjct: 284 RMPNSGRESTIFLPRKLSGLR 304


>SPCC663.11 |||ww domain binding protein 11 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 278

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -1

Query: 398 NVHGMHHLRCDSQRSGRS*EQVSYRPPFGPQRPKGGV 288
           N+HG    R +S ++  +  Q   R PF P+ PK  +
Sbjct: 83  NIHGHRVGRVESDKTKEAERQHKPRKPFIPKNPKRSI 119


>SPAC4F10.09c |||ribosome biogenesis protein Noc1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 860

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -1

Query: 119 APSTVLSSCYVAMVRLHKKIFTQE 48
           APST  +SCY  ++ L++ + T +
Sbjct: 277 APSTSRTSCYYTLITLNQTVLTHK 300


>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -2

Query: 355 PDDHKNRSLTAPLLARSAQKGALSPALG 272
           P  H  RS   PLL++  Q    SP+LG
Sbjct: 53  PPSHLPRSTLHPLLSQQQQPAQQSPSLG 80


>SPCC191.02c ||SPCC417.14c|acetyl-CoA ligase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 662

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +2

Query: 113 MGQKDPGVATTYWQAQCGT 169
           +G+K   VA TYWQ + G+
Sbjct: 410 VGEKRCAVADTYWQTETGS 428


>SPAC1006.07 |||translation initiation factor
           eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 392

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 17/51 (33%), Positives = 26/51 (50%)
 Frame = -2

Query: 316 LARSAQKGALSPALGKISLADFQCDRSIATCIQRDPALFIRSSVHLVGGRP 164
           LA+  QK  +  ALG   L + +C   I   + RD    +++ VH+V G P
Sbjct: 99  LAQQIQKVVV--ALG--DLMNVECHACIGGTLVRDDMAALQAGVHVVVGTP 145


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,465,352
Number of Sequences: 5004
Number of extensions: 52737
Number of successful extensions: 137
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 238029836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)