Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV12a03r
(563 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0041 + 279583-281622,281724-282047,282315-282443,282526-28... 35 0.039
12_02_0520 - 19951590-19952174 30 1.1
10_05_0113 + 9280756-9283489,9283726-9284048,9284201-9284314 30 1.5
10_03_0031 + 7214010-7215450,7215534-7216913,7217007-7217386 29 2.6
01_06_0426 + 29270744-29271064 29 3.4
07_01_1201 - 11419851-11419913,11420090-11420311 28 4.5
04_01_0009 - 178579-178638,179151-179246,179504-179565,180181-18... 28 5.9
02_02_0317 + 8893593-8894207 28 5.9
11_08_0010 + 27605105-27607919,27607954-27608013,27608110-27608495 27 7.8
08_01_0998 - 10136050-10138356 27 7.8
02_01_0674 + 5020118-5020202,5020301-5020436,5021075-5021140,502... 27 7.8
>02_01_0041 +
279583-281622,281724-282047,282315-282443,282526-282648,
282768-282923,283224-283349,283426-283560,283815-283942,
284037-284148,284233-284547,284655-284771,284871-285166,
285252-285783,287980-288082,288808-288881,288965-289062,
289340-289380,289977-290032,290170-290244,290377-290469,
290602-290850,290930-291002,291681-291766,291853-291938,
292067-292142,292280-292347,292430-292496,292570-292665,
292741-292843,293214-293309,293396-293466
Length = 2047
Score = 35.1 bits (77), Expect = 0.039
Identities = 21/54 (38%), Positives = 27/54 (50%)
Frame = -2
Query: 391 TECTICDVTVRDPDDHKNRSLTAPLLARSAQKGALSPALGKISLADFQCDRSIA 230
T+ D V D DD AP+ A+ + + AL PAL +SLAD D S A
Sbjct: 11 TDADFFDKLVDDDDDLSPAPAPAPVPAQQSAEAALLPALSDLSLADDDTDPSPA 64
>12_02_0520 - 19951590-19952174
Length = 194
Score = 30.3 bits (65), Expect = 1.1
Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Frame = -2
Query: 313 ARSAQKGALSPALGKISLADFQCDRSIATCIQRDPALFIRSSVHLVGGRPTLR-LPVRG 140
A +A KG + ++ + F CD+++A + A ++SSV G+P L+ +PV G
Sbjct: 76 AAAAWKGGSNGGAAVVAWSVFSCDQAVAYALMAATAAALQSSVVGKRGQPELQWMPVCG 134
>10_05_0113 + 9280756-9283489,9283726-9284048,9284201-9284314
Length = 1056
Score = 29.9 bits (64), Expect = 1.5
Identities = 17/41 (41%), Positives = 24/41 (58%)
Frame = +1
Query: 433 SLVRRTAL*IITLILDNLSEVLPETHKRSSVHLRKLILGGS 555
SL + L I L L+NLS +LP T S+ L+ + LGG+
Sbjct: 351 SLANCSNLIYINLQLNNLSGILPNTIANLSLELQSIRLGGN 391
>10_03_0031 + 7214010-7215450,7215534-7216913,7217007-7217386
Length = 1066
Score = 29.1 bits (62), Expect = 2.6
Identities = 12/20 (60%), Positives = 16/20 (80%)
Frame = -3
Query: 282 PLWERLV*QISSATGPLPPA 223
PL ERLV Q ++ TGP+PP+
Sbjct: 222 PLLERLVLQCNNLTGPVPPS 241
>01_06_0426 + 29270744-29271064
Length = 106
Score = 28.7 bits (61), Expect = 3.4
Identities = 16/37 (43%), Positives = 19/37 (51%)
Frame = -3
Query: 315 WPAAPKRGRYRPLWERLV*QISSATGPLPPASNETQR 205
W AP R R RP WE + S + G PPA +T R
Sbjct: 62 WYEAP-RLRRRPPWEGATAKASVSKGRTPPAGEKTLR 97
>07_01_1201 - 11419851-11419913,11420090-11420311
Length = 94
Score = 28.3 bits (60), Expect = 4.5
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = +1
Query: 220 GCRWQWTGRTGNLLN*SFPKRAITPPFGRCGPKGGR 327
G +W+ TG TG L SFP A+ P G P R
Sbjct: 26 GQQWRSTGPTGKLCFCSFPAGALPPAAGAGQPAPDR 61
>04_01_0009 -
178579-178638,179151-179246,179504-179565,180181-180245,
181271-181363,181489-181592,182070-182153,182223-182303,
182829-182880,183048-183119,183411-183486,183568-183680,
184056-184203,184295-184372,184511-184640,184733-184923,
187039-187099,187201-187371
Length = 578
Score = 27.9 bits (59), Expect = 5.9
Identities = 22/59 (37%), Positives = 27/59 (45%)
Frame = -1
Query: 341 EQVSYRPPFGPQRPKGGVIARFGKD*FSRFPVRPVHCHLHPTRPSAFY*VVGPSSRWPS 165
E+ Y P + PQ P+ GV+ G D R PV V LH P PS RWP+
Sbjct: 66 ERPMYLPEYPPQEPEQGVLL-LGDD---RDPVDRVEEALHCLPP------YDPSLRWPA 114
>02_02_0317 + 8893593-8894207
Length = 204
Score = 27.9 bits (59), Expect = 5.9
Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 4/50 (8%)
Frame = +3
Query: 84 GHIARREDGRWGRKILEWRPRTGKRSVGRPPTRWTDDLI----KSAGSRW 221
G R GR+ WRP G+ + PT W D + + +GSRW
Sbjct: 70 GEAGEESGSRCGRR---WRPGGGRDTDPHSPTSWRLDPVGEAGEESGSRW 116
>11_08_0010 + 27605105-27607919,27607954-27608013,27608110-27608495
Length = 1086
Score = 27.5 bits (58), Expect = 7.8
Identities = 10/20 (50%), Positives = 16/20 (80%)
Frame = -3
Query: 282 PLWERLV*QISSATGPLPPA 223
P+ + LV Q+++ TGP+PPA
Sbjct: 223 PILQTLVLQVNNLTGPVPPA 242
>08_01_0998 - 10136050-10138356
Length = 768
Score = 27.5 bits (58), Expect = 7.8
Identities = 18/61 (29%), Positives = 25/61 (40%)
Frame = +3
Query: 126 ILEWRPRTGKRSVGRPPTRWTDDLIKSAGSRWMQVAMDRSHWKSAKLIFPKAGDNAPFWA 305
+L W+ + P T W+ SA S W V D + A+L P AG + A
Sbjct: 44 LLRWKSTLSAAASASPLTTWSPATSSSACSSWRGVTCDAA-GHVAELSLPGAGLHGELRA 102
Query: 306 L 308
L
Sbjct: 103 L 103
>02_01_0674 +
5020118-5020202,5020301-5020436,5021075-5021140,
5021219-5021290,5021362-5021433,5024242-5024301,
5024494-5024565,5024655-5024720,5024798-5024863,
5024945-5025273,5025713-5025969,5026213-5026484,
5026580-5026715,5026833-5026972,5027051-5027207,
5027476-5027634
Length = 714
Score = 27.5 bits (58), Expect = 7.8
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = -3
Query: 327 PPPFWPAAPKRGRYRP 280
PPPF P P+R R RP
Sbjct: 246 PPPFMPPPPRRPRNRP 261
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,825,637
Number of Sequences: 37544
Number of extensions: 422443
Number of successful extensions: 1145
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1145
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1293275844
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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