Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12a03r
         (563 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58735-1|AAC48148.1|  891|Caenorhabditis elegans Hypothetical pr...    69   3e-12
AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse trans...    69   3e-12
AF025462-7|AAB71003.1|  805|Caenorhabditis elegans Hypothetical ...    69   3e-12
AC087794-3|AAG53700.1|  417|Caenorhabditis elegans Hypothetical ...    69   3e-12
AC103567-9|AAL35735.1|  204|Caenorhabditis elegans Hypothetical ...    64   9e-11
U88178-6|ABA03112.1|  312|Caenorhabditis elegans Hypothetical pr...    38   0.004
Z29094-8|CAA82337.1|  254|Caenorhabditis elegans Hypothetical pr...    36   0.020
AF026209-10|AAB71273.2|  355|Caenorhabditis elegans Serpentine r...    31   0.57 
Z35641-3|CAE17748.1|  129|Caenorhabditis elegans Hypothetical pr...    29   1.7  
Z46828-1|CAA86856.1|  542|Caenorhabditis elegans Hypothetical pr...    29   2.3  
U40940-5|AAA81706.2|  465|Caenorhabditis elegans Hypothetical pr...    28   5.3  
U70852-2|AAK29821.1| 1231|Caenorhabditis elegans Hypothetical pr...    27   7.0  
AC017117-4|AAF16610.1|  247|Caenorhabditis elegans Hypothetical ...    27   7.0  
U23179-6|AAK68205.1|  341|Caenorhabditis elegans Serpentine rece...    27   9.3  

>U58735-1|AAC48148.1|  891|Caenorhabditis elegans Hypothetical protein
            F20B4.7 protein.
          Length = 891

 Score = 68.5 bits (160), Expect = 3e-12
 Identities = 32/65 (49%), Positives = 37/65 (56%), Gaps = 9/65 (13%)
 Frame = +3

Query: 84   GHIARREDGRWGRKILEWRPRTGKRSVGRPPTRWTDDLIKSAGSR---------WMQVAM 236
            GH+ARR+DGRW   + EWRP   KR VGRPP RWTD L K   +R         W  +A 
Sbjct: 816  GHVARRKDGRWTTLMTEWRPYGWKRPVGRPPMRWTDSLRKEITTRDADGEVITPWSTIAK 875

Query: 237  DRSHW 251
            DR  W
Sbjct: 876  DRKEW 880


>AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse
            transcriptase protein.
          Length = 1066

 Score = 68.5 bits (160), Expect = 3e-12
 Identities = 32/65 (49%), Positives = 37/65 (56%), Gaps = 9/65 (13%)
 Frame = +3

Query: 84   GHIARREDGRWGRKILEWRPRTGKRSVGRPPTRWTDDLIKSAGSR---------WMQVAM 236
            GH+ARR+DGRW   + EWRP   KR VGRPP RWTD L K   +R         W  +A 
Sbjct: 991  GHVARRKDGRWTTLMTEWRPYGWKRPVGRPPMRWTDSLRKEITTRDADGEVITPWSTIAK 1050

Query: 237  DRSHW 251
            DR  W
Sbjct: 1051 DRKQW 1055


>AF025462-7|AAB71003.1|  805|Caenorhabditis elegans Hypothetical
           protein K10F12.5 protein.
          Length = 805

 Score = 68.5 bits (160), Expect = 3e-12
 Identities = 32/65 (49%), Positives = 37/65 (56%), Gaps = 9/65 (13%)
 Frame = +3

Query: 84  GHIARREDGRWGRKILEWRPRTGKRSVGRPPTRWTDDLIKSAGSR---------WMQVAM 236
           GH+ARR+DGRW   + EWRP   KR VGRPP RWTD L K   +R         W  +A 
Sbjct: 730 GHVARRKDGRWTTLMTEWRPYGWKRPVGRPPMRWTDSLRKEITTRDADGEVITPWSTIAK 789

Query: 237 DRSHW 251
           DR  W
Sbjct: 790 DRKQW 794


>AC087794-3|AAG53700.1|  417|Caenorhabditis elegans Hypothetical
           protein Y32G9A.9 protein.
          Length = 417

 Score = 68.5 bits (160), Expect = 3e-12
 Identities = 32/65 (49%), Positives = 37/65 (56%), Gaps = 9/65 (13%)
 Frame = +3

Query: 84  GHIARREDGRWGRKILEWRPRTGKRSVGRPPTRWTDDLIKSAGSR---------WMQVAM 236
           GH+ARR+DGRW   + EWRP   KR VGRPP RWTD L K   +R         W  +A 
Sbjct: 342 GHVARRKDGRWTTLMTEWRPYGWKRPVGRPPMRWTDSLRKEITTRDADGEVITPWSTIAK 401

Query: 237 DRSHW 251
           DR  W
Sbjct: 402 DRKEW 406


>AC103567-9|AAL35735.1|  204|Caenorhabditis elegans Hypothetical
           protein Y51F10.8 protein.
          Length = 204

 Score = 63.7 bits (148), Expect = 9e-11
 Identities = 31/67 (46%), Positives = 36/67 (53%), Gaps = 9/67 (13%)
 Frame = +3

Query: 84  GHIARREDGRWGRKILEWRPRTGKRSVGRPPTRWTDDLIKSAGSR---------WMQVAM 236
           GH+ARR DGRW   + +W PR  KR VGRPP RW D L K   +R         W   A 
Sbjct: 127 GHVARRTDGRWTTLMNDWCPRDEKRPVGRPPMRWNDSLRKEVTTRDAFGQVKQLWSTQAK 186

Query: 237 DRSHWKS 257
           DR  WK+
Sbjct: 187 DRKAWKA 193


>U88178-6|ABA03112.1|  312|Caenorhabditis elegans Hypothetical
           protein W09C3.8 protein.
          Length = 312

 Score = 38.3 bits (85), Expect = 0.004
 Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
 Frame = +3

Query: 78  YHGHIARREDGRWGRKILEWRP---RTGKRSVGRPPTRWTDDL 197
           + GHI RR+  RW +   EW P   +  KR+VG    RW  D+
Sbjct: 216 FAGHILRRDPNRWTKICTEWDPSHNKNWKRAVGGQKKRWAKDI 258


>Z29094-8|CAA82337.1|  254|Caenorhabditis elegans Hypothetical
           protein C07A9.10 protein.
          Length = 254

 Score = 35.9 bits (79), Expect = 0.020
 Identities = 19/44 (43%), Positives = 22/44 (50%), Gaps = 9/44 (20%)
 Frame = +3

Query: 153 KRSVGRPPTRWTDDLIKSAGSR---------WMQVAMDRSHWKS 257
           KR VG+PP RWTD L K   +R         W   A DR  WK+
Sbjct: 14  KRPVGKPPMRWTDSLRKEITTRDMGNNIITPWSTQAKDRKAWKA 57


>AF026209-10|AAB71273.2|  355|Caenorhabditis elegans Serpentine
           receptor, class i protein4 protein.
          Length = 355

 Score = 31.1 bits (67), Expect = 0.57
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -1

Query: 125 LSAPSTVLSSCYVAMVRLHKKIFTQEYENEGKK 27
           +SA S V +SC +     +K +FT+ Y+N  KK
Sbjct: 293 ISAHSAVTTSCLIMTTANYKNLFTKNYDNVRKK 325


>Z35641-3|CAE17748.1|  129|Caenorhabditis elegans Hypothetical
           protein C38H2.3 protein.
          Length = 129

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 18/52 (34%), Positives = 28/52 (53%)
 Frame = -1

Query: 218 TRPSAFY*VVGPSSRWPSHTALASTWSPLQDLSAPSTVLSSCYVAMVRLHKK 63
           T  S +   V P SR+PS + L    SP +D ++P TVL +   +M   H++
Sbjct: 53  TTSSDYQVPVSPQSRFPSSSPLIVI-SPPKDDASPITVLPTAVRSMPETHRR 103


>Z46828-1|CAA86856.1|  542|Caenorhabditis elegans Hypothetical
           protein R03D7.2 protein.
          Length = 542

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -2

Query: 184 HLVGGRPTLRLPVRGRHSRI 125
           HL G +P  R P RGRH R+
Sbjct: 457 HLTGNQPDPRQPKRGRHQRV 476


>U40940-5|AAA81706.2|  465|Caenorhabditis elegans Hypothetical
           protein T03G6.3 protein.
          Length = 465

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +2

Query: 146 YWQAQCGTATY*MDRRPNKKRWVSLD 223
           YW A C  A Y M  +  +KRW +LD
Sbjct: 136 YWFAHCHRAFYDMVVQVPEKRWANLD 161


>U70852-2|AAK29821.1| 1231|Caenorhabditis elegans Hypothetical protein
            F45E4.3a protein.
          Length = 1231

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = -2

Query: 400  TMFTECTICDVTVRDPDDHKNRSLTAPLLARSA 302
            TMF E T+CD   RD DD    ++  PL  +SA
Sbjct: 1105 TMFLEFTVCDYQ-RDVDDLPLGNVQIPLADKSA 1136


>AC017117-4|AAF16610.1|  247|Caenorhabditis elegans Hypothetical
           protein F43C11.6 protein.
          Length = 247

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +3

Query: 180 RWTDDLIKSAGSRWMQVAMDRSHWK 254
           +W DD + +   RWM    + +HWK
Sbjct: 97  KWKDDTLSNQLLRWMFGKAESTHWK 121


>U23179-6|AAK68205.1|  341|Caenorhabditis elegans Serpentine
           receptor, class b (beta)protein 1 protein.
          Length = 341

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +3

Query: 12  LFVCLFLSFVFIFLSKYFFM*PYHGHI 92
           +F  L +  +FIFL K  F  P+HG+I
Sbjct: 28  IFSTLAVPALFIFLLKQIFPLPFHGNI 54


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,076,793
Number of Sequences: 27780
Number of extensions: 311840
Number of successful extensions: 721
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 700
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 721
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1166125180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)