Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV12a03f
(531 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC428.08c |clr4||histone H3 methyltransferase Clr4|Schizosacch... 27 1.3
SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo... 27 1.7
SPCC663.11 |||ww domain binding protein 11 |Schizosaccharomyces ... 26 3.0
SPAC4F10.09c |||ribosome biogenesis protein Noc1 |Schizosaccharo... 26 4.0
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha... 26 4.0
SPCC191.02c ||SPCC417.14c|acetyl-CoA ligase |Schizosaccharomyces... 25 7.0
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 25 7.0
SPBC1683.07 |mal1||alpha-glucosidase Mal1 |Schizosaccharomyces p... 25 9.3
SPAC31G5.11 |pac2||cAMP-independent regulatory protein Pac2 |Sch... 25 9.3
SPAC17G8.06c |||dihydroxy-acid dehydratase|Schizosaccharomyces p... 25 9.3
SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5... 25 9.3
>SPBC428.08c |clr4||histone H3 methyltransferase
Clr4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 490
Score = 27.5 bits (58), Expect = 1.3
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = +1
Query: 388 RWPSHTALASTWSPLQDLSAPSTVLS 465
RW ++++ + TW P ++LS S VL+
Sbjct: 30 RWLNYSSRSDTWEPPENLSGCSAVLA 55
>SPCC1739.11c |cdc11||SIN component scaffold protein
Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1045
Score = 27.1 bits (57), Expect = 1.7
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +2
Query: 407 RLPVRGRHSRIFLPHRPSSLR 469
R+P GR S IFLP + S LR
Sbjct: 284 RMPNSGRESTIFLPRKLSGLR 304
>SPCC663.11 |||ww domain binding protein 11 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 278
Score = 26.2 bits (55), Expect = 3.0
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +1
Query: 166 NVHGMHHLRCDSQRSGRS*EQVSYRPPFGPQRPKGGV 276
N+HG R +S ++ + Q R PF P+ PK +
Sbjct: 83 NIHGHRVGRVESDKTKEAERQHKPRKPFIPKNPKRSI 119
>SPAC4F10.09c |||ribosome biogenesis protein Noc1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 860
Score = 25.8 bits (54), Expect = 4.0
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = +1
Query: 445 APSTVLSSCYVAMVRLHKKIFTQE 516
APST +SCY ++ L++ + T +
Sbjct: 277 APSTSRTSCYYTLITLNQTVLTHK 300
>SPBC23E6.09 |ssn6||transcriptional corepressor
Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1102
Score = 25.8 bits (54), Expect = 4.0
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +2
Query: 209 PDDHKNRSLTAPLLARSAQKGALSPALG 292
P H RS PLL++ Q SP+LG
Sbjct: 53 PPSHLPRSTLHPLLSQQQQPAQQSPSLG 80
>SPCC191.02c ||SPCC417.14c|acetyl-CoA ligase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 662
Score = 25.0 bits (52), Expect = 7.0
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = -3
Query: 451 MGQKDPGVATTYWQAQCGT 395
+G+K VA TYWQ + G+
Sbjct: 410 VGEKRCAVADTYWQTETGS 428
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 25.0 bits (52), Expect = 7.0
Identities = 17/51 (33%), Positives = 26/51 (50%)
Frame = +2
Query: 248 LARSAQKGALSPALGKISLADFQCDRSIATCIQRDPALFIRSSVHLVGGRP 400
LA+ QK + ALG L + +C I + RD +++ VH+V G P
Sbjct: 99 LAQQIQKVVV--ALG--DLMNVECHACIGGTLVRDDMAALQAGVHVVVGTP 145
>SPBC1683.07 |mal1||alpha-glucosidase Mal1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 579
Score = 24.6 bits (51), Expect = 9.3
Identities = 12/42 (28%), Positives = 16/42 (38%), Gaps = 4/42 (9%)
Frame = -1
Query: 408 RSVGRPPTRWTDD----LIKSAGSRWMQVAMDRSHWKSAKLI 295
R GR P W K+ WM+V D W +A +
Sbjct: 436 RDNGRTPMHWDSSPNGGFTKAGVKPWMRVTNDYKEWNAANQV 477
>SPAC31G5.11 |pac2||cAMP-independent regulatory protein Pac2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 235
Score = 24.6 bits (51), Expect = 9.3
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -2
Query: 71 VLPETHKRSSVHLRKLILGGSVY 3
+LP +R S H R LI GSV+
Sbjct: 25 LLPRVQRRLSDHERSLIRAGSVF 47
>SPAC17G8.06c |||dihydroxy-acid dehydratase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 598
Score = 24.6 bits (51), Expect = 9.3
Identities = 10/35 (28%), Positives = 18/35 (51%)
Frame = +1
Query: 370 VVGPSSRWPSHTALASTWSPLQDLSAPSTVLSSCY 474
+ GP S+ S L +T +D+ P ++SC+
Sbjct: 44 ITGPKSQGASQAMLYATGLNEEDMKKPQVGIASCW 78
>SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5
Taf72|Schizosaccharomyces pombe|chr 3|||Manual
Length = 643
Score = 24.6 bits (51), Expect = 9.3
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = -2
Query: 452 DGAERSWSGDHVLASAVWDGHLLD 381
D + WS DH+ V+ GHL D
Sbjct: 442 DQTAQLWSCDHIYPLRVFAGHLSD 465
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,357,347
Number of Sequences: 5004
Number of extensions: 49681
Number of successful extensions: 127
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 218398248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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