Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV12a03f
(531 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0041 + 279583-281622,281724-282047,282315-282443,282526-28... 35 0.036
12_02_0520 - 19951590-19952174 30 1.0
10_05_0113 + 9280756-9283489,9283726-9284048,9284201-9284314 30 1.3
10_03_0031 + 7214010-7215450,7215534-7216913,7217007-7217386 29 2.3
01_06_0426 + 29270744-29271064 29 3.1
07_01_1201 - 11419851-11419913,11420090-11420311 28 4.1
04_01_0009 - 178579-178638,179151-179246,179504-179565,180181-18... 28 5.4
02_02_0317 + 8893593-8894207 28 5.4
11_08_0010 + 27605105-27607919,27607954-27608013,27608110-27608495 27 7.1
08_01_0998 - 10136050-10138356 27 7.1
02_01_0674 + 5020118-5020202,5020301-5020436,5021075-5021140,502... 27 7.1
10_08_0727 - 20133293-20135701 27 9.4
06_03_0843 + 25315089-25315417,25317274-25317310,25317439-253176... 27 9.4
02_04_0621 - 24502383-24502476,24502532-24504015,24504125-245041... 27 9.4
02_01_0677 - 5039344-5039793,5040415-5040462,5040540-5040776,504... 27 9.4
01_02_0019 + 10262685-10262909,10263014-10263076,10263155-102633... 27 9.4
>02_01_0041 +
279583-281622,281724-282047,282315-282443,282526-282648,
282768-282923,283224-283349,283426-283560,283815-283942,
284037-284148,284233-284547,284655-284771,284871-285166,
285252-285783,287980-288082,288808-288881,288965-289062,
289340-289380,289977-290032,290170-290244,290377-290469,
290602-290850,290930-291002,291681-291766,291853-291938,
292067-292142,292280-292347,292430-292496,292570-292665,
292741-292843,293214-293309,293396-293466
Length = 2047
Score = 35.1 bits (77), Expect = 0.036
Identities = 21/54 (38%), Positives = 27/54 (50%)
Frame = +2
Query: 173 TECTICDVTVRDPDDHKNRSLTAPLLARSAQKGALSPALGKISLADFQCDRSIA 334
T+ D V D DD AP+ A+ + + AL PAL +SLAD D S A
Sbjct: 11 TDADFFDKLVDDDDDLSPAPAPAPVPAQQSAEAALLPALSDLSLADDDTDPSPA 64
>12_02_0520 - 19951590-19952174
Length = 194
Score = 30.3 bits (65), Expect = 1.0
Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Frame = +2
Query: 251 ARSAQKGALSPALGKISLADFQCDRSIATCIQRDPALFIRSSVHLVGGRPTLR-LPVRG 424
A +A KG + ++ + F CD+++A + A ++SSV G+P L+ +PV G
Sbjct: 76 AAAAWKGGSNGGAAVVAWSVFSCDQAVAYALMAATAAALQSSVVGKRGQPELQWMPVCG 134
>10_05_0113 + 9280756-9283489,9283726-9284048,9284201-9284314
Length = 1056
Score = 29.9 bits (64), Expect = 1.3
Identities = 17/41 (41%), Positives = 24/41 (58%)
Frame = -2
Query: 131 SLVRRTAL*IITLILDNLSEVLPETHKRSSVHLRKLILGGS 9
SL + L I L L+NLS +LP T S+ L+ + LGG+
Sbjct: 351 SLANCSNLIYINLQLNNLSGILPNTIANLSLELQSIRLGGN 391
>10_03_0031 + 7214010-7215450,7215534-7216913,7217007-7217386
Length = 1066
Score = 29.1 bits (62), Expect = 2.3
Identities = 12/20 (60%), Positives = 16/20 (80%)
Frame = +3
Query: 282 PLWERLV*QISSATGPLPPA 341
PL ERLV Q ++ TGP+PP+
Sbjct: 222 PLLERLVLQCNNLTGPVPPS 241
>01_06_0426 + 29270744-29271064
Length = 106
Score = 28.7 bits (61), Expect = 3.1
Identities = 16/37 (43%), Positives = 19/37 (51%)
Frame = +3
Query: 249 WPAAPKRGRYRPLWERLV*QISSATGPLPPASNETQR 359
W AP R R RP WE + S + G PPA +T R
Sbjct: 62 WYEAP-RLRRRPPWEGATAKASVSKGRTPPAGEKTLR 97
>07_01_1201 - 11419851-11419913,11420090-11420311
Length = 94
Score = 28.3 bits (60), Expect = 4.1
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = -2
Query: 344 GCRWQWTGRTGNLLN*SFPKRAITPPFGRCGPKGGR 237
G +W+ TG TG L SFP A+ P G P R
Sbjct: 26 GQQWRSTGPTGKLCFCSFPAGALPPAAGAGQPAPDR 61
>04_01_0009 -
178579-178638,179151-179246,179504-179565,180181-180245,
181271-181363,181489-181592,182070-182153,182223-182303,
182829-182880,183048-183119,183411-183486,183568-183680,
184056-184203,184295-184372,184511-184640,184733-184923,
187039-187099,187201-187371
Length = 578
Score = 27.9 bits (59), Expect = 5.4
Identities = 22/59 (37%), Positives = 27/59 (45%)
Frame = +1
Query: 223 EQVSYRPPFGPQRPKGGVIARFGKD*FSRFPVRPVHCHLHPTRPSAFY*VVGPSSRWPS 399
E+ Y P + PQ P+ GV+ G D R PV V LH P PS RWP+
Sbjct: 66 ERPMYLPEYPPQEPEQGVLL-LGDD---RDPVDRVEEALHCLPP------YDPSLRWPA 114
>02_02_0317 + 8893593-8894207
Length = 204
Score = 27.9 bits (59), Expect = 5.4
Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 4/50 (8%)
Frame = -1
Query: 480 GHIARREDGRWGRKILEWRPRTGKRSVGRPPTRWTDDLI----KSAGSRW 343
G R GR+ WRP G+ + PT W D + + +GSRW
Sbjct: 70 GEAGEESGSRCGRR---WRPGGGRDTDPHSPTSWRLDPVGEAGEESGSRW 116
>11_08_0010 + 27605105-27607919,27607954-27608013,27608110-27608495
Length = 1086
Score = 27.5 bits (58), Expect = 7.1
Identities = 10/20 (50%), Positives = 16/20 (80%)
Frame = +3
Query: 282 PLWERLV*QISSATGPLPPA 341
P+ + LV Q+++ TGP+PPA
Sbjct: 223 PILQTLVLQVNNLTGPVPPA 242
>08_01_0998 - 10136050-10138356
Length = 768
Score = 27.5 bits (58), Expect = 7.1
Identities = 18/61 (29%), Positives = 25/61 (40%)
Frame = -1
Query: 438 ILEWRPRTGKRSVGRPPTRWTDDLIKSAGSRWMQVAMDRSHWKSAKLIFPKAGDNAPFWA 259
+L W+ + P T W+ SA S W V D + A+L P AG + A
Sbjct: 44 LLRWKSTLSAAASASPLTTWSPATSSSACSSWRGVTCDAA-GHVAELSLPGAGLHGELRA 102
Query: 258 L 256
L
Sbjct: 103 L 103
>02_01_0674 +
5020118-5020202,5020301-5020436,5021075-5021140,
5021219-5021290,5021362-5021433,5024242-5024301,
5024494-5024565,5024655-5024720,5024798-5024863,
5024945-5025273,5025713-5025969,5026213-5026484,
5026580-5026715,5026833-5026972,5027051-5027207,
5027476-5027634
Length = 714
Score = 27.5 bits (58), Expect = 7.1
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = +3
Query: 237 PPPFWPAAPKRGRYRP 284
PPPF P P+R R RP
Sbjct: 246 PPPFMPPPPRRPRNRP 261
>10_08_0727 - 20133293-20135701
Length = 802
Score = 27.1 bits (57), Expect = 9.4
Identities = 16/43 (37%), Positives = 24/43 (55%)
Frame = -2
Query: 137 NPSLVRRTAL*IITLILDNLSEVLPETHKRSSVHLRKLILGGS 9
+PSL R AL ++L + LS V+P + + L KL L G+
Sbjct: 97 SPSLARLPALESVSLFGNRLSGVIPASFVGLAATLHKLNLSGN 139
>06_03_0843 +
25315089-25315417,25317274-25317310,25317439-25317675,
25317745-25317792,25318144-25318577,25318675-25318759
Length = 389
Score = 27.1 bits (57), Expect = 9.4
Identities = 16/34 (47%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Frame = +2
Query: 386 VGGRPTLRLPVRGRHSRIFLPHRP--SSLRAMWP 481
VG PTL L R H R + H P S LR M+P
Sbjct: 157 VGSGPTLDLASRLPHLRAVVLHSPILSGLRVMYP 190
>02_04_0621 -
24502383-24502476,24502532-24504015,24504125-24504177,
24504871-24504984,24505068-24505202,24505960-24506055,
24506692-24506827
Length = 703
Score = 27.1 bits (57), Expect = 9.4
Identities = 10/25 (40%), Positives = 11/25 (44%)
Frame = +3
Query: 402 HCACQYVVATPGSFCPIDRPLFVLC 476
HC+ P C D PLF LC
Sbjct: 632 HCSFMLAEGNPNDLCTSDLPLFGLC 656
>02_01_0677 -
5039344-5039793,5040415-5040462,5040540-5040776,
5040862-5040898,5042474-5042491,5042801-5043153
Length = 380
Score = 27.1 bits (57), Expect = 9.4
Identities = 16/34 (47%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Frame = +2
Query: 386 VGGRPTLRLPVRGRHSRIFLPHRP--SSLRAMWP 481
VG PTL L R H R + H P S LR M+P
Sbjct: 171 VGSGPTLDLASRLPHLRAVVLHSPILSGLRVMYP 204
>01_02_0019 +
10262685-10262909,10263014-10263076,10263155-10263316,
10263407-10263589,10263676-10263806,10264251-10264419,
10264524-10264653,10265702-10265898
Length = 419
Score = 27.1 bits (57), Expect = 9.4
Identities = 14/26 (53%), Positives = 16/26 (61%)
Frame = -3
Query: 448 GQKDPGVATTYWQAQCGTATY*MDRR 371
GQ+D VA Y QCG A Y +DRR
Sbjct: 182 GQEDSHVALCYL-TQCGKARYIVDRR 206
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,185,081
Number of Sequences: 37544
Number of extensions: 405330
Number of successful extensions: 1114
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1078
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1114
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1178343540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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