Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12a03f
         (531 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK128835-1|BAC87635.1|  148|Homo sapiens protein ( Homo sapiens ...    31   2.5  
BC041331-1|AAH41331.2| 1121|Homo sapiens ZNF335 protein protein.       31   3.3  

>AK128835-1|BAC87635.1|  148|Homo sapiens protein ( Homo sapiens
           cDNA FLJ46332 fis, clone TESTI4045470. ).
          Length = 148

 Score = 31.1 bits (67), Expect = 2.5
 Identities = 21/55 (38%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
 Frame = -3

Query: 484 PWPHSTKRGRSMGQKDPGVATTYWQAQCGTATY*MDRRP-NKKRWVSLDAGGNGP 323
           PWPH ++R R   Q  PG   +     CGT T+   RRP +K R       G GP
Sbjct: 22  PWPHRSQRCR---QAVPGHPAS---GCCGTGTFRTQRRPGDKSRRAGSRGRGAGP 70


>BC041331-1|AAH41331.2| 1121|Homo sapiens ZNF335 protein protein.
          Length = 1121

 Score = 30.7 bits (66), Expect = 3.3
 Identities = 19/62 (30%), Positives = 30/62 (48%)
 Frame = -1

Query: 468 RREDGRWGRKILEWRPRTGKRSVGRPPTRWTDDLIKSAGSRWMQVAMDRSHWKSAKLIFP 289
           R + G W RK     PR      G PP RW     ++A +R + +A  RS  ++A +  P
Sbjct: 14  RSQRGTWLRKPRSEVPRPYAPLSGSPPIRWRRTRWRAAATRPLGLAGPRSPLRAAWVWAP 73

Query: 288 KA 283
           ++
Sbjct: 74  RS 75


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 88,869,230
Number of Sequences: 237096
Number of extensions: 2053857
Number of successful extensions: 4075
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3919
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4074
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 5160237082
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)