Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12a03f
         (531 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g04990.1 68418.m00528 sad1/unc-84 protein-related contains we...    32   0.28 
At4g24490.1 68417.m03510 geranylgeranyl transferase alpha subuni...    28   4.5  

>At5g04990.1 68418.m00528 sad1/unc-84 protein-related contains weak
           similarity to Sad1/unc-84 protein-like 1
           (Swiss-Prot:O94901) [Homo sapiens]
          Length = 471

 Score = 31.9 bits (69), Expect = 0.28
 Identities = 13/49 (26%), Positives = 23/49 (46%)
 Frame = -1

Query: 378 TDDLIKSAGSRWMQVAMDRSHWKSAKLIFPKAGDNAPFWALRAKRGAVR 232
           +D  +   GS W    M R+H  + K++ P  G+    + L+   G V+
Sbjct: 296 SDPYLVGKGSSWFATTMRRAHTNAVKMLSPSFGEPGQCFPLKGSEGYVQ 344


>At4g24490.1 68417.m03510 geranylgeranyl transferase alpha
           subunit-related / RAB geranylgeranyltransferase alpha
           subunit-related low similarity to SP|Q08602 [Rattus
           norvegicus]
          Length = 683

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = -3

Query: 520 HILE*IFFYVTLPWPHSTKRGRSMGQKDPGVATTYWQAQC 401
           H ++   +  + P  +S      +G+++PG+ T YW A C
Sbjct: 600 HSVDTTRYLCSSPLSNSELGQDDVGKQNPGLVTKYWDAYC 639


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,937,997
Number of Sequences: 28952
Number of extensions: 287030
Number of successful extensions: 729
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 709
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 728
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 987020800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)