Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12a02r
         (672 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g06640.1 68416.m00772 protein kinase family protein contains ...    32   0.40 
At3g06620.1 68416.m00769 protein kinase family protein contains ...    30   1.6  
At3g06630.1 68416.m00770 protein kinase family protein contains ...    29   2.8  
At5g49470.2 68418.m06121 protein kinase family protein contains ...    28   4.9  
At5g49470.1 68418.m06122 protein kinase family protein contains ...    28   4.9  
At1g67890.1 68414.m07752 protein kinase family protein contains ...    28   4.9  

>At3g06640.1 68416.m00772 protein kinase family protein contains
           Serine/Threonine protein kinases active-site signature,
           PROSITE:PS00108
          Length = 763

 Score = 31.9 bits (69), Expect = 0.40
 Identities = 18/65 (27%), Positives = 35/65 (53%)
 Frame = +1

Query: 319 SDVTNKYLSKQQATANYLQAFNEHRNIMRQRERPNIRVMVLWRFFIKTMSGII*L*VLIN 498
           SDV  K +SKQ+ +   +Q+F +  ++M++   PN+   +L+   +    G+  +   + 
Sbjct: 468 SDVAVKLISKQEYSEEVIQSFRQEVSLMQRLRHPNV---LLFMGAVTLPQGLCIVSEFLP 524

Query: 499 RGSCF 513
           RGS F
Sbjct: 525 RGSLF 529


>At3g06620.1 68416.m00769 protein kinase family protein contains
           Pfam domain, PF00069: Protein kinase domain
          Length = 773

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = +1

Query: 319 SDVTNKYLSKQQATANYLQAFNEHRNIMRQRERPNI 426
           SDV  K  SKQ+ +A  +++F +   +M++   PN+
Sbjct: 516 SDVAVKVFSKQEYSAEVIESFKQEVLLMKRLRHPNV 551


>At3g06630.1 68416.m00770 protein kinase family protein contains
           Pfam profile: PF00069 Eukaryotic protein kinase domain,
           PF00989  PAS domain, and PF00785 PAC motif
          Length = 671

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 11/36 (30%), Positives = 23/36 (63%)
 Frame = +1

Query: 319 SDVTNKYLSKQQATANYLQAFNEHRNIMRQRERPNI 426
           SDV  K  SKQ+ + + +++F +  ++M++   PN+
Sbjct: 456 SDVAVKVFSKQEYSESVIKSFEKEVSLMKRLRHPNV 491


>At5g49470.2 68418.m06121 protein kinase family protein contains
           Pfam domain, PF00069: Protein kinase domain
          Length = 834

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = +1

Query: 319 SDVTNKYLSKQQATANYLQAFNEHRNIMRQRERPNI 426
           SDV  K  SKQ+ +   + +F +  ++M++   PN+
Sbjct: 513 SDVAVKVFSKQEYSEEIITSFRQEVSLMKRLRHPNV 548


>At5g49470.1 68418.m06122 protein kinase family protein contains
           Pfam domain, PF00069: Protein kinase domain
          Length = 483

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = +1

Query: 319 SDVTNKYLSKQQATANYLQAFNEHRNIMRQRERPNI 426
           SDV  K  SKQ+ +   + +F +  ++M++   PN+
Sbjct: 226 SDVAVKVFSKQEYSEEIITSFRQEVSLMKRLRHPNV 261


>At1g67890.1 68414.m07752 protein kinase family protein contains
           Pfam domain, PF00069: Protein kinase domain
          Length = 765

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = +1

Query: 319 SDVTNKYLSKQQATANYLQAFNEHRNIMRQRERPNI 426
           SDV  K  SKQ+ +   + +F +  ++M++   PN+
Sbjct: 509 SDVAVKVFSKQEYSEEIITSFKQEVSLMKRLRHPNV 544


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,450,322
Number of Sequences: 28952
Number of extensions: 190544
Number of successful extensions: 344
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 342
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 344
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1422784080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)