Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12a02f
         (609 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC965.03 |vma8||V-type ATPase subunit D |Schizosaccharomyces p...   159   3e-40
SPCC584.03c |||RanGTP-binding protein |Schizosaccharomyces pombe...    27   1.6  
SPAC17A2.14 ||SPAC17G6.01|CorA family magnesium ion transporter|...    27   2.8  
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch...    26   3.7  
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces...    26   3.7  
SPAC6B12.09 |trm10||tRNA m|Schizosaccharomyces pombe|chr 1|||Manual    25   6.5  
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb...    25   8.7  
SPCC576.15c |ksg1||serine/threonine protein kinase Ksg1|Schizosa...    25   8.7  

>SPCC965.03 |vma8||V-type ATPase subunit D |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 285

 Score =  159 bits (386), Expect = 3e-40
 Identities = 81/177 (45%), Positives = 123/177 (69%), Gaps = 2/177 (1%)
 Frame = +2

Query: 83  MSGKDRLAIFPSRGAQMLIKGRLAGAVKGHGLLKKKADALQVRFRMILSKIIETKTLMGE 262
           M+ K R  +FP+R     +K RL GA  GH LLK+K++AL+ RFR I+  I + K  MG 
Sbjct: 1   MASKQRENVFPTRMTLTTMKTRLKGAQTGHSLLKRKSEALKKRFREIVVNIEQAKQKMGR 60

Query: 263 VMKEAAFSLAEAKFTTG-DFNQVVLQNVTKAQIKIRSKKDNVAGVTLPIFESYQDGS-DT 436
           VM+ AAFS+AE  F  G + N  + Q+V + ++++RSK++N++GV LP FE   D S D 
Sbjct: 61  VMQIAAFSMAEVGFAMGNNINFEIQQSVKQPRLRVRSKQENISGVFLPTFEMNLDESIDD 120

Query: 437 YELAGLARGGQQLAKLKKNFQSAVKLLVELASLQTSFVTLDEVIKITNRRVTAIEHV 607
           ++L GL +GGQQ+ K ++ ++ AV+ LV+LAS Q++FV L +V+++TNRRV +IEH+
Sbjct: 121 FQLTGLGKGGQQIQKARQVYEKAVETLVQLASYQSAFVLLGDVLQMTNRRVNSIEHI 177


>SPCC584.03c |||RanGTP-binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 551

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = -3

Query: 520 DQKLYSALEVLLQLCKLLPTTGQTSQLVGIRTILV*LKDWEG 395
           DQ   + LE L++LC L  TT ++   +    I + LKD++G
Sbjct: 378 DQPNLTLLEYLIRLCALESTTQESVLQLPDEQIALYLKDYQG 419


>SPAC17A2.14 ||SPAC17G6.01|CorA family magnesium ion
           transporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 617

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
 Frame = +1

Query: 454 GPWWA-AACKAEEELPERCKAFGRVSFTADFI 546
           G WW   +C  EEE+    KAFG    T + I
Sbjct: 304 GTWWLDVSCPKEEEIRVLAKAFGIHPLTVEDI 335


>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
            Slh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1935

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = -3

Query: 283  ESSFFHHFTHKGFSLNDFAQDHTEPHL 203
            + SF+ HF H GF +  +     + HL
Sbjct: 1516 KKSFYKHFLHSGFPVESYLHKVLDNHL 1542


>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1526

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 16/57 (28%), Positives = 27/57 (47%)
 Frame = +2

Query: 437 YELAGLARGGQQLAKLKKNFQSAVKLLVELASLQTSFVTLDEVIKITNRRVTAIEHV 607
           + L  L    Q   +LKK     ++L  EL   Q S   ++  +  TN  +TA+E++
Sbjct: 811 FNLRPLLSSTQNDKQLKKRDAEIIELKYELKKQQNSKSEVERDLVETNNSLTAVENL 867


>SPAC6B12.09 |trm10||tRNA m|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 304

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 9/25 (36%), Positives = 18/25 (72%)
 Frame = +2

Query: 533 LQTSFVTLDEVIKITNRRVTAIEHV 607
           ++T+ + +DE IKIT+R++  +  V
Sbjct: 224 IKTAKLPIDEYIKITDRKILTVNQV 248


>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1334

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +1

Query: 433 YLRVGWFGPWWAAACKAEEE 492
           YLR  W  P WA++C  E +
Sbjct: 642 YLRDYWIKPLWASSCIPERK 661


>SPCC576.15c |ksg1||serine/threonine protein kinase
           Ksg1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 592

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = +2

Query: 338 NVTKAQIKIRSKKDNVAGVTLPIFESYQDGSDTYELAGLARGGQQLAKLKK 490
           N+ K  + I SK        + +F ++QD  + Y +  LAR G+ L  + K
Sbjct: 145 NIEKEALCILSKHPGF----IKLFYTFQDAHNLYFVLSLARNGELLDYINK 191


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,452,012
Number of Sequences: 5004
Number of extensions: 49694
Number of successful extensions: 125
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)