Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV12a02f
(609 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_17503| Best HMM Match : No HMM Matches (HMM E-Value=.) 120 9e-28
SB_12657| Best HMM Match : Helicase_C (HMM E-Value=1.2e-10) 31 0.55
SB_18912| Best HMM Match : UCH (HMM E-Value=5.3e-06) 30 1.3
SB_55819| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.1
SB_18834| Best HMM Match : FlgM (HMM E-Value=4.7) 28 5.1
SB_44544| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.8
SB_27572| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.1e-19) 28 6.8
SB_27965| Best HMM Match : Sec61_beta (HMM E-Value=0.84) 27 9.0
SB_10129| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.0
>SB_17503| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 135
Score = 120 bits (289), Expect = 9e-28
Identities = 58/79 (73%), Positives = 68/79 (86%)
Frame = +2
Query: 371 KKDNVAGVTLPIFESYQDGSDTYELAGLARGGQQLAKLKKNFQSAVKLLVELASLQTSFV 550
+KDNVAGV LPIFE DG+++YEL GL+RGGQQL+K ++ + AVKLLVELASLQTSFV
Sbjct: 2 RKDNVAGVLLPIFEPVSDGTNSYELTGLSRGGQQLSKCQEVYGKAVKLLVELASLQTSFV 61
Query: 551 TLDEVIKITNRRVTAIEHV 607
TLDE IK+TNRRV AIEHV
Sbjct: 62 TLDEAIKLTNRRVNAIEHV 80
>SB_12657| Best HMM Match : Helicase_C (HMM E-Value=1.2e-10)
Length = 228
Score = 31.5 bits (68), Expect = 0.55
Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
Frame = +2
Query: 77 IKMSGKDRLAIFPSRGAQMLIKGRLAGAVKGHGLLKKKADALQVRFRM---ILSKIIETK 247
I+MSG+ RG +LI G G GLLK AD L F + ++ ++ +
Sbjct: 105 IQMSGRAGRRGLDERGIVILIIDEKMGPDVGKGLLKGHADPLNSAFHLTYNMVLNLLRVE 164
Query: 248 TLMGEVMKEAAF 283
+ E+M E +F
Sbjct: 165 EINPEIMLEKSF 176
>SB_18912| Best HMM Match : UCH (HMM E-Value=5.3e-06)
Length = 781
Score = 30.3 bits (65), Expect = 1.3
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = +1
Query: 442 VGWFGPWWAAACKAEEEL 495
VGWF P W AC AE +L
Sbjct: 341 VGWFAPPWVRACMAEYQL 358
>SB_55819| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2408
Score = 28.3 bits (60), Expect = 5.1
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = -3
Query: 523 LDQKLYSALEVLLQLCKLLPTTGQTSQLVGIRTILV 416
+D + SA+E+ + C+ + T T L+GI T+L+
Sbjct: 659 VDDLMTSAIELAMNECRWIKTDKSTLILIGIFTVLI 694
>SB_18834| Best HMM Match : FlgM (HMM E-Value=4.7)
Length = 233
Score = 28.3 bits (60), Expect = 5.1
Identities = 33/131 (25%), Positives = 55/131 (41%), Gaps = 1/131 (0%)
Frame = +2
Query: 140 KGRLAGAVKGHGLLKKKADALQVRFRMILSKIIETKTLMGEVMKEAAFSLAEAKFTTGDF 319
K +L A+ + L K K ++++ +K K + A + LA+AK+ +
Sbjct: 43 KSKLQLAIAKYKLAKAKYKLANAKYKLAKAKYKPAKAKYK--LANAKYKLAKAKYKLANA 100
Query: 320 NQVVLQNVTKAQIKIRSKKDNVAGVTLPIFESYQDGSDTYELAGLARGGQQLAKLKKNFQ 499
+ KA+ K+ K A Y+ Y+LA LA +LAK K
Sbjct: 101 KY----KLAKAKYKVAKAKYKFANA------KYKLAKAKYKLAKLAIAKYKLAKAKYKLA 150
Query: 500 SA-VKLLVELA 529
+A KL+V +A
Sbjct: 151 NAKYKLVVLIA 161
>SB_44544| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1480
Score = 27.9 bits (59), Expect = 6.8
Identities = 18/48 (37%), Positives = 21/48 (43%)
Frame = -1
Query: 603 CSMAVTRLFVILITSSRVTNEVCSEANSTKSFTALWKFFFSFASCCPP 460
CS A T LF S RV + VCS + FT L+ F C P
Sbjct: 958 CSRAFTSLFACFPMSVRVCSPVCS-----RVFTCLFACFHLSVRVCSP 1000
>SB_27572| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.1e-19)
Length = 3107
Score = 27.9 bits (59), Expect = 6.8
Identities = 31/157 (19%), Positives = 65/157 (41%), Gaps = 1/157 (0%)
Frame = +2
Query: 137 IKGRLAGAVKGHGLLKKKADALQVRFRMILSKIIETKTLMGEVMKEAAFSLAEAKFTTGD 316
+KG +AG + +G +K K DAL+ + + S + + + + + +A+
Sbjct: 2117 LKGEVAGLKRTNGEMKAKVDALEREKKKLQSDVNAAQAKIAQAQAKQIAEQEKARLKHDG 2176
Query: 317 FNQVVLQNVTKAQIKIRSKKDNVAG-VTLPIFESYQDGSDTYELAGLARGGQQLAKLKKN 493
Q +Q + + K + +TL + D + + KLK N
Sbjct: 2177 ALQKRVQELESSLQKANHDHEGAENELTLVRTRLVKMEQDFADCNRAKESLEYDVKLKNN 2236
Query: 494 FQSAVKLLVELASLQTSFVTLDEVIKITNRRVTAIEH 604
S +K L+ + F DE++ +++VT++E+
Sbjct: 2237 QVSELKDLINSLEAKDKF-DKDEIM-TWHKKVTSLEN 2271
>SB_27965| Best HMM Match : Sec61_beta (HMM E-Value=0.84)
Length = 1737
Score = 27.5 bits (58), Expect = 9.0
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = -3
Query: 325 LVEVSSCELSFSQRESSFFHH-FTHKGFSLNDFAQDHTEPHLKGISLLLE 179
L VS ++E S HH T F + Q+H++ +LKG L+++
Sbjct: 1195 LYSVSEVHTPLCEKECSHQHHALTCLVFGASTQNQNHSDEYLKGFQLVVQ 1244
>SB_10129| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 260
Score = 27.5 bits (58), Expect = 9.0
Identities = 25/83 (30%), Positives = 34/83 (40%), Gaps = 3/83 (3%)
Frame = -3
Query: 331 DNLVEVSSCELSFSQRESSFFHHFTHKGFSL---NDFAQDHTEPHLKGISLLLEETMAFH 161
D+ VE SS +LS ++ + HF H GF D +D +EP I + +
Sbjct: 59 DSFVE-SSVDLSNHAAQNDYNEHFDHNGFETYHSEDEDEDGSEPPSSSILTQVSQIEHDL 117
Query: 160 CTSQATLN*HLGTPRRENR*SIF 92
T A N GT R S F
Sbjct: 118 KTKSAAYNNIKGTLASLERKSTF 140
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,342,801
Number of Sequences: 59808
Number of extensions: 377491
Number of successful extensions: 857
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 792
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 857
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1487884875
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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