Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12a02f
         (609 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    23   2.3  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    22   5.4  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    22   5.4  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   5.4  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      21   7.1  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          21   9.4  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   9.4  

>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +3

Query: 366 GPRRTMLLVSPSQSLSHTRMVLIPTSWLVWPVVGSSL 476
           GP R +    P++ L H     IP  WLV+P    SL
Sbjct: 16  GPPRLLGWNVPAEELIH-----IPEHWLVYPEPNPSL 47


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +1

Query: 433 YLRVGWFGPW 462
           Y RV W GPW
Sbjct: 55  YERVEWSGPW 64


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = -3

Query: 268 HHFTHKGFSLNDFAQDHTEPHLKGI 194
           HH THKG  +      HT   L G+
Sbjct: 572 HHLTHKGKPIRMRIGIHTGMVLAGV 596


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 8/21 (38%), Positives = 9/21 (42%)
 Frame = +1

Query: 328 CPTKCYQGSNQD*VQEGQCCW 390
           C   C  G  +  V   QCCW
Sbjct: 587 CSLPCEVGQAKKYVAGEQCCW 607


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = -1

Query: 231 LLKIIRNLT*RASAFFLRRPWPFTAPAR 148
           L+  I ++      FFLR+ +PF  P++
Sbjct: 220 LIYFIEDIGLNTYYFFLRQAFPFWLPSK 247


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -1

Query: 189 FFLRRPWPFTAPAR 148
           FFLR+ +PF  P++
Sbjct: 234 FFLRQAFPFWLPSK 247


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = -2

Query: 56  YPNSGFFTPKPKSP 15
           YP  G  +P P SP
Sbjct: 83  YPGGGSSSPSPSSP 96


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,249
Number of Sequences: 438
Number of extensions: 3140
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17971191
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)