Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12a02f
         (609 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g58730.1 68416.m06546 vacuolar ATP synthase subunit D (VATD) ...   179   1e-45
At1g56130.1 68414.m06445 leucine-rich repeat family protein / pr...    32   0.26 
At4g36870.1 68417.m05228 BEL1-like homeobox 2 protein (BLH2)           31   0.79 
At3g19190.1 68416.m02436 expressed protein                             29   1.8  
At3g45300.1 68416.m04891 isovaleryl-CoA-dehydrogenase (IVD) iden...    27   7.4  
At4g33240.1 68417.m04731 phosphatidylinositol-4-phosphate 5-kina...    27   9.7  

>At3g58730.1 68416.m06546 vacuolar ATP synthase subunit D (VATD) /
           V-ATPase D subunit / vacuolar proton pump D subunit
           (VATPD) identical to Vacuolar ATP synthase subunit D (EC
           3.6.3.14) (V-ATPase D subunit) (Vacuolar proton pump D
           subunit) (Swiss-Prot:Q9XGM1) [Arabidopsis thaliana]
          Length = 261

 Score =  179 bits (436), Expect = 1e-45
 Identities = 89/177 (50%), Positives = 127/177 (71%), Gaps = 2/177 (1%)
 Frame = +2

Query: 83  MSGKD-RLAIFPSRGAQMLIKGRLAGAVKGHGLLKKKADALQVRFRMILSKIIETKTLMG 259
           M+G++ RL + P+     ++K RL GA +GH LLKKK+DAL V+FR +L KI+  K  MG
Sbjct: 1   MAGQNARLNVVPTVTMLGVMKARLVGATRGHALLKKKSDALTVQFRALLKKIVTAKESMG 60

Query: 260 EVMKEAAFSLAEAKFTTGD-FNQVVLQNVTKAQIKIRSKKDNVAGVTLPIFESYQDGSDT 436
           ++MK ++F+L E K+  GD    VVL+NV +A +K+RS+ +N+AGV LP F+ + +G   
Sbjct: 61  DMMKTSSFALTEVKYVAGDNVKHVVLENVKEATLKVRSRTENIAGVKLPKFDHFSEGETK 120

Query: 437 YELAGLARGGQQLAKLKKNFQSAVKLLVELASLQTSFVTLDEVIKITNRRVTAIEHV 607
            +L GLARGGQQ+   +  +  A+++LVELASLQTSF+TLDE IK TNRRV A+E+V
Sbjct: 121 NDLTGLARGGQQVRACRVAYVKAIEVLVELASLQTSFLTLDEAIKTTNRRVNALENV 177


>At1g56130.1 68414.m06445 leucine-rich repeat family protein /
           protein kinase family protein contains Pfam domains
           PF00560: Leucine Rich Repeat and PF00069: Protein kinase
           domain
          Length = 1032

 Score = 32.3 bits (70), Expect = 0.26
 Identities = 20/70 (28%), Positives = 32/70 (45%)
 Frame = +2

Query: 113 PSRGAQMLIKGRLAGAVKGHGLLKKKADALQVRFRMILSKIIETKTLMGEVMKEAAFSLA 292
           PS+G      G + G + G GLL   A  +    R    +  + + L+G  +K   F+ +
Sbjct: 628 PSKGKNRT--GTIVGVIVGVGLLSILAGVVMFTIRKRRKRYTDDEELLGMDVKPYIFTYS 685

Query: 293 EAKFTTGDFN 322
           E K  T DF+
Sbjct: 686 ELKSATQDFD 695


>At4g36870.1 68417.m05228 BEL1-like homeobox 2 protein (BLH2)
          Length = 638

 Score = 30.7 bits (66), Expect = 0.79
 Identities = 21/74 (28%), Positives = 37/74 (50%)
 Frame = +2

Query: 302 FTTGDFNQVVLQNVTKAQIKIRSKKDNVAGVTLPIFESYQDGSDTYELAGLARGGQQLAK 481
           F   D   +  Q   + Q     ++ +VAG  +P++ES    S+ +   G + GG+ L  
Sbjct: 46  FDRSDSPNLTTQQKQEHQRVEMDEESSVAGGRIPVYESAGMLSEMFNFPGSSGGGRDL-D 104

Query: 482 LKKNFQSAVKLLVE 523
           L ++F+S  +LL E
Sbjct: 105 LGQSFRSNRQLLEE 118


>At3g19190.1 68416.m02436 expressed protein
          Length = 1861

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 18/56 (32%), Positives = 27/56 (48%)
 Frame = -1

Query: 543 EVCSEANSTKSFTALWKFFFSFASCCPPRAKPANS*VSEPSWYDSKIGRVTPATLS 376
           EV  + ++ + F  LWK F SF S C P    ++     P+   + +    PATLS
Sbjct: 309 EVRFQPSTIRWFLQLWKTFTSFGSDCFPSVSHSDFLTDSPT-IPTNVMVTPPATLS 363


>At3g45300.1 68416.m04891 isovaleryl-CoA-dehydrogenase (IVD)
           identical to isovaleryl-CoA-dehydrogenase precursor
           [Arabidopsis thaliana] GI:5596622
          Length = 409

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
 Frame = -3

Query: 298 SFSQRESSFFHHFTHKGF--SLNDFAQDHTEPHLKGI 194
           SFS R SS     T   F  S++ FAQD+  PH + I
Sbjct: 21  SFSSRSSSLLFDDTQLQFKESVSKFAQDNIAPHAERI 57


>At4g33240.1 68417.m04731 phosphatidylinositol-4-phosphate 5-kinase
           family protein similar to SP|Q9Z1T6 FYVE
           finger-containing phosphoinositide kinase (EC 2.7.1.68)
           (1- phosphatidylinositol-4-phosphate kinase) (PIP5K)
           (PtdIns(4)P-5-kinase) {Mus musculus}; contains Pfam
           profiles PF01504: Phosphatidylinositol-4-phosphate
           5-Kinase, PF01363: FYVE zinc finger, PF00118:
           TCP-1/cpn60 chaperonin family
          Length = 1756

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = -3

Query: 364 NLDLSLGNIL*DNLVEVSSCELSFSQRESSFFHHFTHKGFSL 239
           + D  LG  L DNL +   C  S +    +  H +TH+  SL
Sbjct: 852 SFDKPLGRFLRDNLFDQDQCCPSCTMPAEAHIHCYTHRQGSL 893


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,021,596
Number of Sequences: 28952
Number of extensions: 268161
Number of successful extensions: 671
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 658
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 670
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1216725696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)