Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12a01r
         (702 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0403 - 17635530-17635578,17635737-17635820,17636110-176362...    30   2.0  
02_02_0549 + 11410129-11412180                                         29   3.6  
12_02_0367 - 18053979-18054618,18055844-18055988,18056049-18056649     28   8.3  
07_03_1704 + 28839628-28839908,28840010-28840123,28840416-288407...    28   8.3  

>10_08_0403 -
           17635530-17635578,17635737-17635820,17636110-17636219,
           17637507-17637638,17638497-17638576,17638877-17639008,
           17639534-17639648,17640244-17640286,17640359-17640493,
           17641347-17641414,17641473-17641478
          Length = 317

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 22/54 (40%), Positives = 27/54 (50%), Gaps = 7/54 (12%)
 Frame = -1

Query: 360 LGLGCRLREDLRCC--FGSQQ-----PTKTPSEPPGHHQRRLRPHVRKLCDHWL 220
           LGLG  LR  L CC  +GS++     P      P G+H  RL P V  LC  W+
Sbjct: 128 LGLGTALRLALECCQEWGSRRSMPRLPMDGSMAPSGYHPVRLWPAV--LCLGWV 179


>02_02_0549 + 11410129-11412180
          Length = 683

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 18/48 (37%), Positives = 23/48 (47%)
 Frame = -2

Query: 551 LAFGTANIFSGGTRVTTSSVHLHGSYNMNNLNNDVAIINHNHVGFNNN 408
           LA     +F+G   V ++S HL         N D   IN+NHVG N N
Sbjct: 129 LANNYMGLFNGTGSVGSASNHLFAVELDTIQNPDFRDINNNHVGININ 176


>12_02_0367 - 18053979-18054618,18055844-18055988,18056049-18056649
          Length = 461

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -2

Query: 638 CGASLLTNTRSVTAAHC 588
           CG+ ++T TRSVT A C
Sbjct: 275 CGSRIITTTRSVTVASC 291


>07_03_1704 +
           28839628-28839908,28840010-28840123,28840416-28840769,
           28841072-28841268,28841496-28841587,28841700-28842027,
           28842328-28842535,28843555-28843669,28844023-28844190,
           28844804-28845476,28845552-28845758,28845911-28847001
          Length = 1275

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +3

Query: 495 TGGGDPGAAGEDVSCTKSEGELTSL 569
           +GGG+PG  G++ S TK+ G +  L
Sbjct: 438 SGGGNPGMMGQNDSSTKTVGNMLHL 462


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,843,521
Number of Sequences: 37544
Number of extensions: 247431
Number of successful extensions: 926
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 907
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 926
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)