Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12a01r
         (702 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70848-2|AAB09110.4|  313|Caenorhabditis elegans Trypsin-like pr...    45   5e-05
U29380-14|AAA68746.2|  293|Caenorhabditis elegans Trypsin-like p...    41   7e-04
U58751-11|AAB00662.1|  265|Caenorhabditis elegans Trypsin-like p...    35   0.065
AL023842-4|CAA19517.2|  229|Caenorhabditis elegans Hypothetical ...    31   0.60 
Z78013-9|CAB01420.2|  297|Caenorhabditis elegans Hypothetical pr...    31   0.80 
Z81479-3|CAB03942.1|  283|Caenorhabditis elegans Hypothetical pr...    28   7.4  
Z81479-2|CAB03941.1|  283|Caenorhabditis elegans Hypothetical pr...    28   7.4  
U42436-6|AAM15564.1|  615|Caenorhabditis elegans Not-like (yeast...    27   9.8  
U42436-5|AAF99894.2|  796|Caenorhabditis elegans Not-like (yeast...    27   9.8  
AF003384-12|AAB54236.2|  331|Caenorhabditis elegans Trypsin-like...    27   9.8  

>U70848-2|AAB09110.4|  313|Caenorhabditis elegans Trypsin-like
           protease protein 3 protein.
          Length = 313

 Score = 45.2 bits (102), Expect = 5e-05
 Identities = 57/242 (23%), Positives = 98/242 (40%), Gaps = 17/242 (7%)
 Frame = -2

Query: 683 LAGLVIALTNGRTSICGASLLTNTRSVTAAHCWRTRNAQARQFTLAFGTANIFSGGTRVT 504
           +A LV    NG+  +CGA+++ +   VTAAHC      Q R F       N  +     +
Sbjct: 51  MAKLVSYGDNGQGILCGATVIDDFWLVTAAHC--ALQLQTRSFVYVREPKN--NRERSFS 106

Query: 503 TSSVHLHGSYNMNNLNNDVAIINHNHVGFNNNIQRINLA---SXXXXXXXXXXXXXXXGR 333
               ++H  YN    +ND+A++  +       I+ + L    S                 
Sbjct: 107 VKEAYIHSGYNNQTADNDIALLRISSDLSKLGIKPVCLVHDDSKLLKQYKNGVVIGYGLT 166

Query: 332 TSDAASG----ANNQQKRQVSLQVITNAVCARTYG-----NSVIIGSTLCVSGANGRSTC 180
             + +SG     N+Q  +  S+ +I++  C +T+      +  I G  +C +GA    T 
Sbjct: 167 LGEDSSGEPKLINSQTLQSTSVPIISDDDCVKTWRFLSLLSVKITGYQIC-AGAYLHGTA 225

Query: 179 XXXXXXXXXXXXXXGRQL-IGITSFGSD--RGC--QRGYPAGFARVTSFNSWIRARI*MT 15
                         G  + IGITS+G+D   G   Q  +P  + R++ +  WI+  I  T
Sbjct: 226 PGDSGGPLLIHKSNGEYVQIGITSYGADGLDGVIDQGKFPGVYTRISKYVPWIQGVIGKT 285

Query: 14  DL 9
            +
Sbjct: 286 SM 287


>U29380-14|AAA68746.2|  293|Caenorhabditis elegans Trypsin-like
           protease protein 1 protein.
          Length = 293

 Score = 41.1 bits (92), Expect = 7e-04
 Identities = 47/207 (22%), Positives = 85/207 (41%), Gaps = 6/207 (2%)
 Frame = -2

Query: 638 CGASLLTNTRSVTAAHCWRTRNAQARQFTLAFGTANIFSGGTRVTTSSVHLHGSYNMNNL 459
           CG SL+     +TAAHC+  ++ +   +++  G     SG     T +V +H  YN+   
Sbjct: 84  CGGSLIDPNFVLTAAHCF-AKDRRPTSYSVRVGGHRSGSGSPHRVT-AVSIHPWYNIGFP 141

Query: 458 NN-DVAIIN-HNHVGFNNNIQRINLASXXXXXXXXXXXXXXXGRTSDAASGANNQQKRQV 285
           ++ D AI+  H  V  +   + I L S                 ++   S  +    R++
Sbjct: 142 SSYDFAIMRIHPPVNTSTTARPICLPSLPAVENRLCVVTGWG--STIEGSSLSAPTLREI 199

Query: 284 SLQVITNAVCAR--TYGNSVIIGSTLCVSGANGR-STCXXXXXXXXXXXXXXGRQLIGIT 114
            + +++   C+    Y   + + S LC   + G+  +C                +L G+ 
Sbjct: 200 HVPLLSTLFCSSLPNYIGRIHLPSMLCAGYSYGKIDSCQGDSGGPLMCARDGHWELTGVV 259

Query: 113 SFGSDRGCQR-GYPAGFARVTSFNSWI 36
           S+G   GC R G P  +  V S ++WI
Sbjct: 260 SWGI--GCARPGMPGVYGNVHSASTWI 284


>U58751-11|AAB00662.1|  265|Caenorhabditis elegans Trypsin-like
           protease protein 2 protein.
          Length = 265

 Score = 34.7 bits (76), Expect = 0.065
 Identities = 31/109 (28%), Positives = 47/109 (43%), Gaps = 4/109 (3%)
 Frame = -2

Query: 698 GAXPHLAGLVIALTNGRTSICGASLLTNTRSVTAAHCW-RTRNAQARQFTLAFGTANIFS 522
           GA P  A L    T      CGAS+L  T  +TAAHC+       + +  +     N   
Sbjct: 36  GAFPWTAALRNKATKAHH--CGASILDKTHLITAAHCFEEDERVSSYEVVVGDWDNNQTD 93

Query: 521 GGTRV-TTSSVHLHGSYNMNNLNNDVAIINHNHVG--FNNNIQRINLAS 384
           G  ++     +H +  Y  +  ++D+AI+   + G  FN   Q I L S
Sbjct: 94  GNEQIFYLQRIHFYPLYK-DIFSHDIAILEIPYPGIEFNEYAQPICLPS 141


>AL023842-4|CAA19517.2|  229|Caenorhabditis elegans Hypothetical
           protein Y44A6D.3 protein.
          Length = 229

 Score = 31.5 bits (68), Expect = 0.60
 Identities = 17/41 (41%), Positives = 22/41 (53%)
 Frame = -2

Query: 524 SGGTRVTTSSVHLHGSYNMNNLNNDVAIINHNHVGFNNNIQ 402
           +   R+   S H  G   +NN+NN+    NHNH   NNNIQ
Sbjct: 68  AAAARLNAQSSHSSGPARLNNMNNN-NNNNHNH-SKNNNIQ 106


>Z78013-9|CAB01420.2|  297|Caenorhabditis elegans Hypothetical
           protein F15B9.5 protein.
          Length = 297

 Score = 31.1 bits (67), Expect = 0.80
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = -2

Query: 683 LAGLVIALTNGRTSICGASLLTNTRSVTAAHC 588
           LA ++    +G T++CG  L+  +  +T+AHC
Sbjct: 31  LASVITRFPDGTTNVCGGVLIAPSIVITSAHC 62


>Z81479-3|CAB03942.1|  283|Caenorhabditis elegans Hypothetical
           protein C34F6.3 protein.
          Length = 283

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = +3

Query: 501 GGDPGAAGEDVSCTKSEGELTSLGVPGSP 587
           GG PG AG+  S     G+    G PGSP
Sbjct: 192 GGRPGQAGQTRSAPSPPGQPGQPGEPGSP 220


>Z81479-2|CAB03941.1|  283|Caenorhabditis elegans Hypothetical
           protein C34F6.2 protein.
          Length = 283

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = +3

Query: 501 GGDPGAAGEDVSCTKSEGELTSLGVPGSP 587
           GG PG AG+  S     G+    G PGSP
Sbjct: 192 GGRPGQAGQTRSAPSPPGQPGQPGEPGSP 220


>U42436-6|AAM15564.1|  615|Caenorhabditis elegans Not-like (yeast
           ccr4/not complexcomponent) protein 4, isoform b protein.
          Length = 615

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
 Frame = -1

Query: 417 QQQHPAHQPSQWKQQLCWYLGLGCRLREDL---RCCFGSQQP 301
           QQQH A Q +Q  QQ   Y G+   +  D+   R  FG   P
Sbjct: 468 QQQHQAQQQAQQHQQQQMYAGINSYMYNDMLMPRVPFGMAPP 509


>U42436-5|AAF99894.2|  796|Caenorhabditis elegans Not-like (yeast
           ccr4/not complexcomponent) protein 4, isoform a protein.
          Length = 796

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
 Frame = -1

Query: 417 QQQHPAHQPSQWKQQLCWYLGLGCRLREDL---RCCFGSQQP 301
           QQQH A Q +Q  QQ   Y G+   +  D+   R  FG   P
Sbjct: 649 QQQHQAQQQAQQHQQQQMYAGINSYMYNDMLMPRVPFGMAPP 690


>AF003384-12|AAB54236.2|  331|Caenorhabditis elegans Trypsin-like
           protease protein 5 protein.
          Length = 331

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -2

Query: 641 ICGASLLTNTRSVTAAHCWR 582
           ICG +L+T    +TAAHC++
Sbjct: 61  ICGGTLITLKHVLTAAHCFQ 80


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,580,750
Number of Sequences: 27780
Number of extensions: 189004
Number of successful extensions: 622
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 607
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 621
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1624019012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)