Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12a01f
         (569 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|c...    26   3.4  
SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces po...    26   4.5  
SPAC6C3.02c |||CHCH domain protein|Schizosaccharomyces pombe|chr...    25   5.9  

>SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 19/70 (27%), Positives = 29/70 (41%), Gaps = 2/70 (2%)
 Frame = +2

Query: 248 ALTNGRTSICGASLLTNTRSVTAAHCWRTRNAQ--ARQFTLAFGTANIFSGGTRVTTSSV 421
           A T   T + G +    + +  +   + + NA   +   T +FG A      T  +TSS 
Sbjct: 28  AATPAATGLFGNTNNNTSSTAPSGGLFGSNNASNTSAPSTFSFGKAATTGNSTNASTSSP 87

Query: 422 HLHGSYNMNN 451
              GS N NN
Sbjct: 88  FSFGSTNTNN 97


>SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 743

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 18/74 (24%), Positives = 35/74 (47%), Gaps = 3/74 (4%)
 Frame = +2

Query: 305 SVTAAHCWRTRNAQARQFTLAFGTANIFSGGTRVTTSSV-HLHGSYNMNNLNNDVAIINH 481
           S+ AA  +R+ N +      +    NI  G   +    + H    +  + +N  V+ IN+
Sbjct: 365 SLLAALDFRSSNEEQHPGLRSLDPLNIQDGDLTMHPMHIRHSQSDFYPSGINTPVSGINY 424

Query: 482 NHVGF--NNNIQRI 517
            ++GF  NN++Q +
Sbjct: 425 PNLGFSANNSVQSL 438


>SPAC6C3.02c |||CHCH domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 172

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = -2

Query: 211 VGGRTTHNPGTVEVSGFLGASKTLSPGDTDL 119
           +G    H  G+V   GF G+    +P DT +
Sbjct: 70  IGSAIGHTVGSVITGGFSGSGSNNAPADTSV 100


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,927,645
Number of Sequences: 5004
Number of extensions: 31436
Number of successful extensions: 104
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 242064240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)