Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV12a01f
(569 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0786 - 7606984-7607037,7607235-7607379,7608103-7608163,760... 32 0.28
06_03_1301 - 29159262-29159810,29160360-29160493,29160615-291607... 29 2.6
02_02_0549 + 11410129-11412180 29 2.6
06_03_1234 - 28586365-28587973,28590411-28590694 29 3.4
12_02_0367 - 18053979-18054618,18055844-18055988,18056049-18056649 28 6.0
10_02_0061 - 4812903-4812940,4813140-4813536 28 6.0
07_03_1704 + 28839628-28839908,28840010-28840123,28840416-288407... 28 6.0
05_03_0235 - 10747649-10748118,10748226-10748314,10748477-107485... 28 6.0
03_04_0198 - 18381668-18381830,18381903-18382060,18382164-183821... 27 8.0
>08_01_0786 -
7606984-7607037,7607235-7607379,7608103-7608163,
7608273-7608465
Length = 150
Score = 32.3 bits (70), Expect = 0.28
Identities = 18/42 (42%), Positives = 22/42 (52%)
Frame = -3
Query: 306 ERVLVSKEAPQMEVLPFVSAITSPARWG*APALAAEPPTILV 181
E + AP LPF S + + AR G APAL+A P LV
Sbjct: 2 EATAAAAAAPARSALPFRSRVAAAARPGRAPALSAAPGRRLV 43
>06_03_1301 -
29159262-29159810,29160360-29160493,29160615-29160750,
29161031-29161347,29161872-29161944
Length = 402
Score = 29.1 bits (62), Expect = 2.6
Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 8/63 (12%)
Frame = -2
Query: 172 VSGFLGASKTLSP----GDTDLVVVVKFDGLFCHDHGRQRHQYCCEDLHGY----YQFTG 17
+ G + A K L+P GD + + V + G + H + + YCCED H Y G
Sbjct: 108 IHGAVVAVKQLNPLGHQGDREWLTEVSYLGQYNHPNLVELIGYCCEDDHRLLVYEYMANG 167
Query: 16 SLE 8
SLE
Sbjct: 168 SLE 170
>02_02_0549 + 11410129-11412180
Length = 683
Score = 29.1 bits (62), Expect = 2.6
Identities = 18/48 (37%), Positives = 23/48 (47%)
Frame = +2
Query: 362 LAFGTANIFSGGTRVTTSSVHLHGSYNMNNLNNDVAIINHNHVGFNNN 505
LA +F+G V ++S HL N D IN+NHVG N N
Sbjct: 129 LANNYMGLFNGTGSVGSASNHLFAVELDTIQNPDFRDINNNHVGININ 176
>06_03_1234 - 28586365-28587973,28590411-28590694
Length = 630
Score = 28.7 bits (61), Expect = 3.4
Identities = 22/78 (28%), Positives = 32/78 (41%), Gaps = 9/78 (11%)
Frame = +2
Query: 197 GSAANAGAHPHLAGLVIALTNGRTSICGASLLTNTRSVTAAHC---------WRTRNAQA 349
G+ A AG P L + ++L GR I G S+ S + + WR N
Sbjct: 527 GNPAGAGPPPRLDHVAVSLPGGRVLIFGGSV-AGLHSASQLYLLDPTEEKPTWRILNVPG 585
Query: 350 RQFTLAFGTANIFSGGTR 403
R A+G + GGT+
Sbjct: 586 RPPRFAWGHSTCVVGGTK 603
>12_02_0367 - 18053979-18054618,18055844-18055988,18056049-18056649
Length = 461
Score = 27.9 bits (59), Expect = 6.0
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +2
Query: 275 CGASLLTNTRSVTAAHC 325
CG+ ++T TRSVT A C
Sbjct: 275 CGSRIITTTRSVTVASC 291
>10_02_0061 - 4812903-4812940,4813140-4813536
Length = 144
Score = 27.9 bits (59), Expect = 6.0
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
Frame = +3
Query: 63 WRWRPWSW---QKRPSNLTTTTRSVSPGLRVLDAPRKP 167
WRWR W W +R ++ T S++ G R+L R P
Sbjct: 41 WRWRQWWWLEATRRANSSTAVGGSMAVG-RLLPRSRSP 77
>07_03_1704 +
28839628-28839908,28840010-28840123,28840416-28840769,
28841072-28841268,28841496-28841587,28841700-28842027,
28842328-28842535,28843555-28843669,28844023-28844190,
28844804-28845476,28845552-28845758,28845911-28847001
Length = 1275
Score = 27.9 bits (59), Expect = 6.0
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = -2
Query: 418 TGGGDPGAAGEDVSCTKSEGELTSL 344
+GGG+PG G++ S TK+ G + L
Sbjct: 438 SGGGNPGMMGQNDSSTKTVGNMLHL 462
>05_03_0235 -
10747649-10748118,10748226-10748314,10748477-10748574,
10748934-10749046,10749107-10749200,10749557-10749589,
10749734-10749851,10750110-10750210,10751036-10751233,
10751337-10751471,10751752-10751830,10753650-10753738,
10753835-10753987,10754100-10754285
Length = 651
Score = 27.9 bits (59), Expect = 6.0
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = -1
Query: 227 GGEHQRWRQNHPQSW 183
GG HQR R +HP +W
Sbjct: 559 GGHHQRRRHHHPPAW 573
>03_04_0198 -
18381668-18381830,18381903-18382060,18382164-18382199,
18382344-18382439,18382632-18382709,18382921-18383073,
18383261-18383365
Length = 262
Score = 27.5 bits (58), Expect = 8.0
Identities = 9/23 (39%), Positives = 12/23 (52%)
Frame = +1
Query: 181 YQDCGWFCRQRWCSPPSCWTCDR 249
Y++ GW+ Q W PP DR
Sbjct: 128 YEETGWYDGQMWVKPPEVLARDR 150
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,416,843
Number of Sequences: 37544
Number of extensions: 265408
Number of successful extensions: 967
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 939
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 967
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1317005676
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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