Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV12a01f
(569 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U70848-2|AAB09110.4| 313|Caenorhabditis elegans Trypsin-like pr... 49 2e-06
U58751-11|AAB00662.1| 265|Caenorhabditis elegans Trypsin-like p... 42 4e-04
Z78013-9|CAB01420.2| 297|Caenorhabditis elegans Hypothetical pr... 38 0.007
U29380-14|AAA68746.2| 293|Caenorhabditis elegans Trypsin-like p... 37 0.009
AL023842-4|CAA19517.2| 229|Caenorhabditis elegans Hypothetical ... 31 0.44
AF003384-12|AAB54236.2| 331|Caenorhabditis elegans Trypsin-like... 29 2.4
Z99278-4|CAB16492.1| 871|Caenorhabditis elegans Hypothetical pr... 29 3.1
Z99278-3|CAB16493.1| 867|Caenorhabditis elegans Hypothetical pr... 29 3.1
Z81479-3|CAB03942.1| 283|Caenorhabditis elegans Hypothetical pr... 28 5.4
Z81479-2|CAB03941.1| 283|Caenorhabditis elegans Hypothetical pr... 28 5.4
U80437-17|AAB37628.1| 180|Caenorhabditis elegans Hypothetical p... 27 9.5
U40187-2|AAA81159.1| 282|Caenorhabditis elegans Collagen protei... 27 9.5
M25479-1|AAA27993.1| 282|Caenorhabditis elegans collagen protein. 27 9.5
AF003390-3|AAB54272.1| 1308|Caenorhabditis elegans Hypothetical ... 27 9.5
>U70848-2|AAB09110.4| 313|Caenorhabditis elegans Trypsin-like
protease protein 3 protein.
Length = 313
Score = 49.2 bits (112), Expect = 2e-06
Identities = 30/97 (30%), Positives = 50/97 (51%)
Frame = +2
Query: 185 RIVGGSAANAGAHPHLAGLVIALTNGRTSICGASLLTNTRSVTAAHCWRTRNAQARQFTL 364
RI+GG++ + GA+ +A LV NG+ +CGA+++ + VTAAHC Q R F
Sbjct: 37 RIIGGNSIDDGAN-WMAKLVSYGDNGQGILCGATVIDDFWLVTAAHC--ALQLQTRSFVY 93
Query: 365 AFGTANIFSGGTRVTTSSVHLHGSYNMNNLNNDVAII 475
N + + ++H YN +ND+A++
Sbjct: 94 VREPKN--NRERSFSVKEAYIHSGYNNQTADNDIALL 128
>U58751-11|AAB00662.1| 265|Caenorhabditis elegans Trypsin-like
protease protein 2 protein.
Length = 265
Score = 41.5 bits (93), Expect = 4e-04
Identities = 35/119 (29%), Positives = 52/119 (43%), Gaps = 4/119 (3%)
Frame = +2
Query: 185 RIVGGSAANAGAHPHLAGLVIALTNGRTSICGASLLTNTRSVTAAHCW-RTRNAQARQFT 361
R+VGG GA P A L T CGAS+L T +TAAHC+ + +
Sbjct: 26 RVVGGFETVPGAFPWTAALRNKATKAHH--CGASILDKTHLITAAHCFEEDERVSSYEVV 83
Query: 362 LAFGTANIFSGGTRV-TTSSVHLHGSYNMNNLNNDVAIINHNHVG--FNNNIQRINLAS 529
+ N G ++ +H + Y + ++D+AI+ + G FN Q I L S
Sbjct: 84 VGDWDNNQTDGNEQIFYLQRIHFYPLYK-DIFSHDIAILEIPYPGIEFNEYAQPICLPS 141
>Z78013-9|CAB01420.2| 297|Caenorhabditis elegans Hypothetical
protein F15B9.5 protein.
Length = 297
Score = 37.5 bits (83), Expect = 0.007
Identities = 16/48 (33%), Positives = 28/48 (58%)
Frame = +2
Query: 182 TRIVGGSAANAGAHPHLAGLVIALTNGRTSICGASLLTNTRSVTAAHC 325
T I+ G +AN+ LA ++ +G T++CG L+ + +T+AHC
Sbjct: 15 TSIINGFSANSFDTLSLASVITRFPDGTTNVCGGVLIAPSIVITSAHC 62
>U29380-14|AAA68746.2| 293|Caenorhabditis elegans Trypsin-like
protease protein 1 protein.
Length = 293
Score = 37.1 bits (82), Expect = 0.009
Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Frame = +2
Query: 185 RIVGGSAANAGAHPHLAGLVIALTNGRTSICGASLLTNTRSVTAAHCWRTRNAQARQFTL 364
R++GGS ++ + P L+ L + R CG SL+ +TAAHC+ ++ + +++
Sbjct: 57 RLIGGSESSPHSWPWTVQLLSRLGHHR---CGGSLIDPNFVLTAAHCF-AKDRRPTSYSV 112
Query: 365 AFGTANIFSGGT-RVTTSSVH 424
G SG RVT S+H
Sbjct: 113 RVGGHRSGSGSPHRVTAVSIH 133
>AL023842-4|CAA19517.2| 229|Caenorhabditis elegans Hypothetical
protein Y44A6D.3 protein.
Length = 229
Score = 31.5 bits (68), Expect = 0.44
Identities = 17/41 (41%), Positives = 22/41 (53%)
Frame = +2
Query: 389 SGGTRVTTSSVHLHGSYNMNNLNNDVAIINHNHVGFNNNIQ 511
+ R+ S H G +NN+NN+ NHNH NNNIQ
Sbjct: 68 AAAARLNAQSSHSSGPARLNNMNNN-NNNNHNH-SKNNNIQ 106
>AF003384-12|AAB54236.2| 331|Caenorhabditis elegans Trypsin-like
protease protein 5 protein.
Length = 331
Score = 29.1 bits (62), Expect = 2.4
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 5/49 (10%)
Frame = +2
Query: 200 SAANAGAHPHLAGLVIAL-TNGRTS----ICGASLLTNTRSVTAAHCWR 331
+A N G HLA + + R ICG +L+T +TAAHC++
Sbjct: 32 AAGNTGNPTHLAPWAVQIRVKARKGDFEVICGGTLITLKHVLTAAHCFQ 80
>Z99278-4|CAB16492.1| 871|Caenorhabditis elegans Hypothetical
protein Y53C12B.3b protein.
Length = 871
Score = 28.7 bits (61), Expect = 3.1
Identities = 12/40 (30%), Positives = 19/40 (47%)
Frame = -1
Query: 245 SQVQQDGGEHQRWRQNHPQSWYRRSQRLPRRV*DSQPGGY 126
SQ + DG +HQ + PQ Y + + + + P GY
Sbjct: 355 SQNEDDGQQHQHQNEQQPQQGYHQQDFVSNPLWNQMPVGY 394
>Z99278-3|CAB16493.1| 867|Caenorhabditis elegans Hypothetical
protein Y53C12B.3a protein.
Length = 867
Score = 28.7 bits (61), Expect = 3.1
Identities = 12/40 (30%), Positives = 19/40 (47%)
Frame = -1
Query: 245 SQVQQDGGEHQRWRQNHPQSWYRRSQRLPRRV*DSQPGGY 126
SQ + DG +HQ + PQ Y + + + + P GY
Sbjct: 355 SQNEDDGQQHQHQNEQQPQQGYHQQDFVSNPLWNQMPVGY 394
>Z81479-3|CAB03942.1| 283|Caenorhabditis elegans Hypothetical
protein C34F6.3 protein.
Length = 283
Score = 27.9 bits (59), Expect = 5.4
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = -2
Query: 412 GGDPGAAGEDVSCTKSEGELTSLGVPGSP 326
GG PG AG+ S G+ G PGSP
Sbjct: 192 GGRPGQAGQTRSAPSPPGQPGQPGEPGSP 220
>Z81479-2|CAB03941.1| 283|Caenorhabditis elegans Hypothetical
protein C34F6.2 protein.
Length = 283
Score = 27.9 bits (59), Expect = 5.4
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = -2
Query: 412 GGDPGAAGEDVSCTKSEGELTSLGVPGSP 326
GG PG AG+ S G+ G PGSP
Sbjct: 192 GGRPGQAGQTRSAPSPPGQPGQPGEPGSP 220
>U80437-17|AAB37628.1| 180|Caenorhabditis elegans Hypothetical
protein C43E11.9 protein.
Length = 180
Score = 27.1 bits (57), Expect = 9.5
Identities = 14/49 (28%), Positives = 25/49 (51%)
Frame = -2
Query: 187 PGTVEVSGFLGASKTLSPGDTDLVVVVKFDGLFCHDHGRQRHQYCCEDL 41
P T E + + A GD +++ + DG +C + ++R YC E+L
Sbjct: 3 PLTEEETSLVFAKLASFIGDNVSMLIDRNDGDYCFRNHKERVYYCSENL 51
>U40187-2|AAA81159.1| 282|Caenorhabditis elegans Collagen protein 8
protein.
Length = 282
Score = 27.1 bits (57), Expect = 9.5
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -2
Query: 409 GDPGAAGEDVSCTKSEGELTSLGVPGSPAV 320
G+PG AGED ++G + GVPG P +
Sbjct: 225 GNPGGAGED----GNQGPVGHPGVPGRPGI 250
>M25479-1|AAA27993.1| 282|Caenorhabditis elegans collagen protein.
Length = 282
Score = 27.1 bits (57), Expect = 9.5
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -2
Query: 409 GDPGAAGEDVSCTKSEGELTSLGVPGSPAV 320
G+PG AGED ++G + GVPG P +
Sbjct: 225 GNPGGAGED----GNQGPVGHPGVPGRPGI 250
>AF003390-3|AAB54272.1| 1308|Caenorhabditis elegans Hypothetical
protein R155.2 protein.
Length = 1308
Score = 27.1 bits (57), Expect = 9.5
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +2
Query: 425 LHGSYNMNNLNNDVAIINHNHVGFNNNIQRIN 520
LH S N + L+N I+N F ++Q+IN
Sbjct: 501 LHDSMNQHTLDNMSQIVNVTDAKFLESVQKIN 532
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,102,655
Number of Sequences: 27780
Number of extensions: 199588
Number of successful extensions: 666
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 655
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 665
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1187327456
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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