Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11p24r
         (378 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25B8.16 |||RNase P and RNase MRP subunit |Schizosaccharomyce...    27   0.98 
SPAC13G7.04c |mac1||membrane anchored protein Mac1 |Schizosaccha...    25   3.9  
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce...    25   5.2  
SPAC1687.20c |mis6||inner centromere protein Mis6|Schizosaccharo...    24   9.1  
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    24   9.1  
SPBC1683.09c |frp1||ferric-chelate reductase Frp1|Schizosaccharo...    24   9.1  

>SPAC25B8.16 |||RNase P and RNase MRP subunit |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 698

 Score = 27.1 bits (57), Expect = 0.98
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -3

Query: 85  FGKSNANDXSPVVLTSISSFTEWILQN 5
           FG S AN   PV L S  SFT +++++
Sbjct: 243 FGNSFANGLPPVFLNSSRSFTSYLVKS 269


>SPAC13G7.04c |mac1||membrane anchored protein Mac1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 756

 Score = 25.0 bits (52), Expect = 3.9
 Identities = 15/50 (30%), Positives = 19/50 (38%)
 Frame = +3

Query: 75  LFPKDTMPTSAFWKKARGTQVXYCRSRGHQPGPNRXIICYQSRRDHDPCT 224
           +FPK   P +A    A  TQ+    +  H   PN       S  D  P T
Sbjct: 382 MFPKTARPFAAIHANASSTQLRNTENITHPGIPNHFAKTTSSVFDEPPAT 431


>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2310

 Score = 24.6 bits (51), Expect = 5.2
 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 5/31 (16%)
 Frame = +3

Query: 171  PNRXIICYQ-SRRD-HDPCT---VPCSFLCW 248
            PN  +   Q +++D HD  T   VPC+F CW
Sbjct: 1141 PNNILTTKQRTQKDLHDKLTSKKVPCTFCCW 1171


>SPAC1687.20c |mis6||inner centromere protein
           Mis6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 672

 Score = 23.8 bits (49), Expect = 9.1
 Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
 Frame = -3

Query: 190 QIMXRXGPGWXPR-LRQXLTWVPLAFFQNALVGXVSFGKSNANDXSPVVLTSISSFTEWI 14
           +I  +  P   P+ L   L + P AF+ N++VG +   K+         + +IS FT   
Sbjct: 481 KIRKQIEPNIPPKELIYVLFFQPSAFYINSMVGLLLLTKNYQERLMDSRIDAISKFTHSY 540

Query: 13  LQNV 2
           L+++
Sbjct: 541 LKSL 544


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 23.8 bits (49), Expect = 9.1
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -2

Query: 125  PCLLPKCASRHXIFW 81
            P +L  C S H IFW
Sbjct: 1290 PVILNMCQSHHVIFW 1304


>SPBC1683.09c |frp1||ferric-chelate reductase
           Frp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 564

 Score = 23.8 bits (49), Expect = 9.1
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = +1

Query: 187 FVISHDAIMTLVLFPAVFFV 246
           ++++H  I+TL+  P VF +
Sbjct: 67  YLVTHKVILTLIAVPVVFAI 86


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,375,545
Number of Sequences: 5004
Number of extensions: 21637
Number of successful extensions: 63
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 122233080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)