Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11p24r
         (378 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_1019 - 10398880-10399314,10399401-10399481,10399560-103996...    27   4.9  
01_07_0111 - 41137822-41138973,41139453-41139540,41139850-411399...    27   4.9  
12_02_0701 + 22271550-22271652,22272310-22272791,22272823-22272927     27   6.5  
09_02_0290 - 6963673-6963966,6964279-6964590,6964693-6964832,696...    26   8.6  

>12_01_1019 -
           10398880-10399314,10399401-10399481,10399560-10399652,
           10399784-10399999,10403837-10403935,10404244-10404867,
           10404946-10405033,10405167-10405430,10406437-10406504
          Length = 655

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = +3

Query: 114 KKARGTQVXYCRSRGHQPGPNR 179
           +K  G    Y R RGH P PNR
Sbjct: 536 EKVLGKAYGYIRGRGHGPKPNR 557


>01_07_0111 -
           41137822-41138973,41139453-41139540,41139850-41139969,
           41140165-41140211,41140796-41141029,41141305-41141505,
           41141506-41143407,41144140-41145303,41145574-41145879
          Length = 1737

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = -3

Query: 364 PTRCXNAPGYFC*XARMGNYRSRRQCIXRXPPQARTHC 251
           PT    A  ++C  A++ NY  R +     P + RT C
Sbjct: 528 PTTWDKANEHYCRHAQLVNYHKRTEIFKHIPCKIRTLC 565


>12_02_0701 + 22271550-22271652,22272310-22272791,22272823-22272927
          Length = 229

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
 Frame = -3

Query: 310 NYRSRRQC--IXRXPPQARTHCDQQRKLQG 227
           N R RR    I   PP  R HC+++R+++G
Sbjct: 89  NCRRRRHHPRIRLRPPPTRRHCEREREMRG 118


>09_02_0290 -
           6963673-6963966,6964279-6964590,6964693-6964832,
           6965124-6965187,6965263-6965493,6965580-6965714,
           6966484-6966517,6966664-6966692
          Length = 412

 Score = 26.2 bits (55), Expect = 8.6
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +2

Query: 317 PSXSTKIPWGITTP 358
           P  ST +PWG TTP
Sbjct: 80  PGTSTVLPWGCTTP 93


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,499,148
Number of Sequences: 37544
Number of extensions: 161173
Number of successful extensions: 335
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 329
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 334
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 612769692
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)