Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11p24r
         (378 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35182| Best HMM Match : CUB (HMM E-Value=0)                         31   0.23 
SB_3824| Best HMM Match : Trypsin (HMM E-Value=2.8026e-45)             31   0.31 
SB_33085| Best HMM Match : Trypsin (HMM E-Value=0)                     30   0.72 
SB_52206| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.72 
SB_25649| Best HMM Match : Trypsin (HMM E-Value=0)                     29   0.95 
SB_17112| Best HMM Match : Trypsin (HMM E-Value=0)                     28   2.2  
SB_21575| Best HMM Match : Trypsin (HMM E-Value=0)                     28   2.9  
SB_18806| Best HMM Match : RVT_1 (HMM E-Value=1.7e-14)                 27   3.8  
SB_45181| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.1  
SB_11023| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.1  
SB_29511| Best HMM Match : CHGN (HMM E-Value=0.00037)                  27   6.7  
SB_6739| Best HMM Match : RCC1 (HMM E-Value=1.6e-34)                   26   8.8  

>SB_35182| Best HMM Match : CUB (HMM E-Value=0)
          Length = 963

 Score = 31.5 bits (68), Expect = 0.23
 Identities = 15/53 (28%), Positives = 27/53 (50%)
 Frame = -1

Query: 318 GWGTTVQGXSVSXGXLHKLELIVTNKENCREQYKGHDRVVTDNKLXAGXVRAG 160
           GWG   +G   +   L + ++ + +++ C  Q    DR +T+N L AG  + G
Sbjct: 351 GWGALQEGAGSTSKVLMQAKVPLVSRDQCSHQQSYGDR-ITENMLCAGMRQGG 402


>SB_3824| Best HMM Match : Trypsin (HMM E-Value=2.8026e-45)
          Length = 234

 Score = 31.1 bits (67), Expect = 0.31
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = -3

Query: 112 QNALVGXVSFGKSNANDXSPVVLTSISSFTEWI 14
           Q  L G VSFG  N    S  V T +S++ +WI
Sbjct: 142 QWTLYGVVSFGAGNCEVTSYTVYTKVSNYLDWI 174


>SB_33085| Best HMM Match : Trypsin (HMM E-Value=0)
          Length = 537

 Score = 29.9 bits (64), Expect = 0.72
 Identities = 17/57 (29%), Positives = 22/57 (38%)
 Frame = -1

Query: 345 PQGIFVDXLGWGTTVQGXSVSXGXLHKLELIVTNKENCREQYKGHDRVVTDNKLXAG 175
           P G      GWG+T    S S   L ++ L + N   C   Y    R +T     AG
Sbjct: 415 PAGTLCYVTGWGSTNYRGSPSPNYLQEVGLPLVNHSQCHATYLTASRKITPRMRCAG 471


>SB_52206| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 786

 Score = 29.9 bits (64), Expect = 0.72
 Identities = 17/57 (29%), Positives = 22/57 (38%)
 Frame = -1

Query: 345 PQGIFVDXLGWGTTVQGXSVSXGXLHKLELIVTNKENCREQYKGHDRVVTDNKLXAG 175
           P G      GWG+T    S S   L ++ L + N   C   Y    R +T     AG
Sbjct: 664 PAGTLCYVTGWGSTNYRGSPSPNYLQEVGLPLVNHSQCHATYLTASRKITPRMRCAG 720


>SB_25649| Best HMM Match : Trypsin (HMM E-Value=0)
          Length = 718

 Score = 29.5 bits (63), Expect = 0.95
 Identities = 17/68 (25%), Positives = 27/68 (39%)
 Frame = -1

Query: 363 QQGVVMPQGIFVDXLGWGTTVQGXSVSXGXLHKLELIVTNKENCREQYKGHDRVVTDNKL 184
           Q     P G      GWG TV    V    L +L++ + NK  C      +  ++ +  +
Sbjct: 103 QDDTEFPAGKMCYLTGWGETVLDSGVFSPTLKQLKVPLVNKSVCNSN-NSYSGIIHEQFM 161

Query: 183 XAGXVRAG 160
            AG  + G
Sbjct: 162 CAGYNQGG 169


>SB_17112| Best HMM Match : Trypsin (HMM E-Value=0)
          Length = 636

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
 Frame = -1

Query: 363 QQGVVMPQGIFVDXLGWGTTVQGXSVS-XGXLHKLELIVTNKENCREQY 220
           +QG  +  G      GWG TV G   S    L +  L V N++ C+  Y
Sbjct: 468 RQGEELSDGKICYATGWGLTVGGDWKSQSDVLKQTPLPVVNRQECQTDY 516


>SB_21575| Best HMM Match : Trypsin (HMM E-Value=0)
          Length = 696

 Score = 27.9 bits (59), Expect = 2.9
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -3

Query: 103 LVGXVSFGKSNANDXSPVVLTSISSFTEWILQ 8
           L G VS+GK +       V   ++S+T+WI Q
Sbjct: 280 LHGAVSYGKLHCPTTYYTVFARVASYTDWIKQ 311


>SB_18806| Best HMM Match : RVT_1 (HMM E-Value=1.7e-14)
          Length = 556

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 11/41 (26%), Positives = 21/41 (51%)
 Frame = +1

Query: 250 HNEFELVEXAXRYTXALNGSSPSEXINKNTLGHYXTLLDNS 372
           ++++++     R+    NG+ PS   N NT  HY  +  N+
Sbjct: 45  YSDYDIPTRGERHHAQHNGALPSHPYNNNTGDHYMQMESNT 85


>SB_45181| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 747

 Score = 27.1 bits (57), Expect = 5.1
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +3

Query: 123 RGTQVXYCRSRGHQPGPNRXIICYQSRRDHDPCT 224
           RGT+  Y R RG +PG +  +  + SR     CT
Sbjct: 474 RGTERSYRRHRGKEPGLSHVVRGWVSREQSVFCT 507


>SB_11023| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 669

 Score = 27.1 bits (57), Expect = 5.1
 Identities = 20/66 (30%), Positives = 26/66 (39%)
 Frame = -1

Query: 318 GWGTTVQGXSVSXGXLHKLELIVTNKENCREQYKGHDRVVTDNKLXAGXVRAGXRDXDNX 139
           GWG        S   L +  L + + ENCR +Y     V +   L AG  R+      N 
Sbjct: 563 GWGAINGDTQQSPDILQQAMLPIASHENCRRKY---GDVSSTAHLCAGEARSDAAGGCNG 619

Query: 138 *LGCPL 121
             G PL
Sbjct: 620 DSGGPL 625



 Score = 26.6 bits (56), Expect = 6.7
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -3

Query: 103 LVGXVSFGKSNANDXSPVVLTSISSFTEWI 14
           L G VS+G  N       V   ++S+T+WI
Sbjct: 301 LHGAVSYGLRNCPTTHYTVFARVASYTDWI 330



 Score = 26.6 bits (56), Expect = 6.7
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -3

Query: 103 LVGXVSFGKSNANDXSPVVLTSISSFTEWI 14
           L G VS+G  N       V   ++S+T+WI
Sbjct: 635 LHGAVSYGLRNCPTTHYTVFARVASYTDWI 664


>SB_29511| Best HMM Match : CHGN (HMM E-Value=0.00037)
          Length = 955

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 15/42 (35%), Positives = 19/42 (45%)
 Frame = +1

Query: 187 FVISHDAIMTLVLFPAVFFVGHNEFELVEXAXRYTXALNGSS 312
           ++I   AI  L L   + F G NEF   E   RY   L G +
Sbjct: 9   YIIKLSAIALLALTVVIVFHG-NEFSYSEKVRRYVDGLKGGT 49


>SB_6739| Best HMM Match : RCC1 (HMM E-Value=1.6e-34)
          Length = 1790

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +2

Query: 218 LYCSLQFSLLVTMSSSLW 271
           +YC  QFSL +T   S+W
Sbjct: 706 VYCGAQFSLALTRDGSVW 723


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,124,310
Number of Sequences: 59808
Number of extensions: 201085
Number of successful extensions: 388
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 341
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 388
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 632178915
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)