Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11p24r
         (378 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    21   4.8  
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    21   4.8  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    20   8.4  

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 21.0 bits (42), Expect = 4.8
 Identities = 12/52 (23%), Positives = 22/52 (42%)
 Frame = +2

Query: 215 PLYCSLQFSLLVTMSSSLWRXPXDTLXP*TVVPHPSXSTKIPWGITTPCWIT 370
           P   S   + +VT  + +   P DT+    ++      ++I +  T  CW T
Sbjct: 211 PFLISWGIAQVVTTVAGIVSYPFDTVRRRMMMQSGRAKSEILYKSTLHCWAT 262


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 21.0 bits (42), Expect = 4.8
 Identities = 12/52 (23%), Positives = 22/52 (42%)
 Frame = +2

Query: 215 PLYCSLQFSLLVTMSSSLWRXPXDTLXP*TVVPHPSXSTKIPWGITTPCWIT 370
           P   S   + +VT  + +   P DT+    ++      ++I +  T  CW T
Sbjct: 211 PFLISWGIAQVVTTVAGIVSYPFDTVRRRMMMQSGRAKSEILYKSTLHCWAT 262


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 20.2 bits (40), Expect = 8.4
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +3

Query: 204 RDHDPCTVPCSF 239
           R+HDP   P SF
Sbjct: 400 REHDPAKFPPSF 411


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,440
Number of Sequences: 438
Number of extensions: 1615
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  9176370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)