Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11p24r
         (378 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g01350.2 68415.m00052 quinolinate phosphoribosyl transferase ...    29   1.4  
At2g01350.1 68415.m00053 quinolinate phosphoribosyl transferase ...    29   1.4  
At4g26965.1 68417.m03880 NADH:ubiquinone oxidoreductase family p...    27   4.1  
At5g25830.1 68418.m03065 zinc finger (GATA type) family protein ...    26   7.2  
At4g16080.1 68417.m02438 hypothetical protein contains Pfam prof...    26   7.2  

>At2g01350.2 68415.m00052 quinolinate phosphoribosyl transferase
           family protein contains Pfam profile: PF01729
           quinolinate phosphoribosyl transferase, C-terminal
           domain
          Length = 281

 Score = 28.7 bits (61), Expect = 1.4
 Identities = 12/43 (27%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = -2

Query: 239 KTAGNSTRVMIAS*LITNYXPVXSGLVXATXTIXDLGAP-CLL 114
           K +GN+ ++++A  ++ N+    SG+   T  + D  +P C+L
Sbjct: 59  KVSGNAHKIVVAERVLLNFMQRMSGIATLTKLMADAASPACIL 101


>At2g01350.1 68415.m00053 quinolinate phosphoribosyl transferase
           family protein contains Pfam profile: PF01729
           quinolinate phosphoribosyl transferase, C-terminal
           domain
          Length = 348

 Score = 28.7 bits (61), Expect = 1.4
 Identities = 12/43 (27%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = -2

Query: 239 KTAGNSTRVMIAS*LITNYXPVXSGLVXATXTIXDLGAP-CLL 114
           K +GN+ ++++A  ++ N+    SG+   T  + D  +P C+L
Sbjct: 126 KVSGNAHKIVVAERVLLNFMQRMSGIATLTKLMADAASPACIL 168


>At4g26965.1 68417.m03880 NADH:ubiquinone oxidoreductase family
           protein contains Pfam profile PF05071: NADH:ubiquinone
           oxidoreductase 17.2 kD subunit
          Length = 184

 Score = 27.1 bits (57), Expect = 4.1
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +3

Query: 201 RRDHDPCTVPCSFLCW 248
           RR+ DP ++P  ++CW
Sbjct: 47  RREEDPTSIPVEWICW 62


>At5g25830.1 68418.m03065 zinc finger (GATA type) family protein
           GATA transcription factor, Arabidopsis thaliana,
           PIR:T05288
          Length = 331

 Score = 26.2 bits (55), Expect = 7.2
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = -1

Query: 375 GAVIQQGVVMPQGIFVDXLGWGTTVQGXSVSXGXLHKLELI 253
           G      + +P     D L W + +   S+S   +HKLELI
Sbjct: 64  GTSFSGDLCIPSDDLADELEWLSNIVDESLSPEDVHKLELI 104


>At4g16080.1 68417.m02438 hypothetical protein contains Pfam profile
           PF03478: Protein of unknown function (DUF295)
          Length = 379

 Score = 26.2 bits (55), Expect = 7.2
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +2

Query: 215 PLYCSLQFSLLVTMSSSLWRXPXDTL 292
           P Y  L FS+LVT  +SLW    D +
Sbjct: 212 PQYHELNFSILVTGHTSLWSLLQDNV 237


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,419,359
Number of Sequences: 28952
Number of extensions: 123351
Number of successful extensions: 230
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 221
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 230
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 517767328
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)