Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11p24f
(540 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3A11.07 |||NADH dehydrogenase|Schizosaccharomyces pombe|chr ... 29 0.33
SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|ch... 27 1.3
SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|... 26 3.1
SPBC13E7.02 |cwf24||GCN5-related N acetyltransferase|Schizosacch... 26 3.1
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 26 4.1
SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|ch... 26 4.1
SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo... 25 7.2
SPAC23C11.01 |||ER membrane protein, ICE2 family|Schizosaccharom... 25 9.5
SPAP8A3.03 |||ZIP zinc transporter 1|Schizosaccharomyces pombe|c... 25 9.5
SPCC550.10 |meu8||betaine aldehyde dehydrogenase |Schizosaccharo... 25 9.5
SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomy... 25 9.5
>SPAC3A11.07 |||NADH dehydrogenase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 551
Score = 29.5 bits (63), Expect = 0.33
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = +3
Query: 204 PTTTTFQLLPVSMENSTILHTVALSLDLPVAVSPVKYLMFTLLL 335
P+ T +L ++IL T+ SL + VSP Y +FT LL
Sbjct: 89 PSKKTLVVLGAGWGATSILRTIDTSLFNVIVVSPRNYFLFTSLL 132
>SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|chr
3|||Manual
Length = 687
Score = 27.5 bits (58), Expect = 1.3
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -1
Query: 99 RSLAVQLQTAASTATAKVRTETIVPIESN 13
R L + + A +A+ K+ TE I+P ESN
Sbjct: 605 RQLHIDFENPAVSASEKLSTEEIIPQESN 633
>SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|chr
3|||Manual
Length = 828
Score = 26.2 bits (55), Expect = 3.1
Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Frame = +3
Query: 180 NSALVLFSPTTTT-FQLLPVSMENSTI--LHTVALSLDLPVAVSPVKYLMFTLLLTIPNS 350
N L+ F T T LLP++ I ++TV LSL + S V+ L+F +L +
Sbjct: 290 NLILISFLSTKTDKIVLLPINALKDLIQRVYTVQLSLPVKSVESSVQALLFMVLPHLHTL 349
Query: 351 LRRITTRM 374
+ +T ++
Sbjct: 350 VNELTLKL 357
>SPBC13E7.02 |cwf24||GCN5-related N
acetyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 533
Score = 26.2 bits (55), Expect = 3.1
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = -3
Query: 325 VNIRYFTGLTATGRSSDNATVCRIVEFSME 236
+N+ Y + L+ATG S + TV I E + E
Sbjct: 94 INVEYQSNLSATGESVNTTTVSAINEDTRE 123
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 25.8 bits (54), Expect = 4.1
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +1
Query: 1 DQISIRLDRNNGFRSHLSRSCAR 69
D +S R DR++ FRSH S R
Sbjct: 41 DDVSSRRDRHDSFRSHESNKIRR 63
>SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 546
Score = 25.8 bits (54), Expect = 4.1
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = +1
Query: 214 LPFNCYLFPWRILRSCIPSHYRWIFP 291
LP + + F W +C P H WI P
Sbjct: 426 LPISMFWFAW----TCYPHHIHWIVP 447
>SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1616
Score = 25.0 bits (52), Expect = 7.2
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -2
Query: 401 WHVLLVRCSHPCRNSPQRIRDG*QQSEHKIFH 306
W +LLV + C NS +R+G Q +IF+
Sbjct: 1024 WIMLLVHLADLCENSWASVRNGAAQILFRIFN 1055
>SPAC23C11.01 |||ER membrane protein, ICE2
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 441
Score = 24.6 bits (51), Expect = 9.5
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = +3
Query: 288 PVAVSPVKYLMFTLLLTIPNSLRRITTRM*ASYE*HMPSTSAQTSSRV 431
P + V YL+ T+ T+P +L I M A+ + PS A + R+
Sbjct: 288 PNILQSVHYLISTISATLPRTLYNIVLFMVAAAKTVAPSVFATFAFRI 335
>SPAP8A3.03 |||ZIP zinc transporter 1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 453
Score = 24.6 bits (51), Expect = 9.5
Identities = 15/54 (27%), Positives = 27/54 (50%)
Frame = +3
Query: 117 LASIPAWSKLKYSYPS*INGSNSALVLFSPTTTTFQLLPVSMENSTILHTVALS 278
L S+ ++ + ++SY S NG + + P L+P S + S + VA+S
Sbjct: 120 LNSVKSFVEKQFSYSSGTNGILATFLTAIPPNIFILLVPKSFDTSMLNLFVAVS 173
>SPCC550.10 |meu8||betaine aldehyde dehydrogenase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 500
Score = 24.6 bits (51), Expect = 9.5
Identities = 13/47 (27%), Positives = 23/47 (48%)
Frame = -3
Query: 328 KVNIRYFTGLTATGRSSDNATVCRIVEFSMETGSS*KVVVVGENNTS 188
K+ FTG ATG+ +A IV ++E G +++ + + S
Sbjct: 241 KIAYLAFTGSLATGKKIMHAAAENIVPLTLELGGKSPLIICEDADLS 287
>SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 756
Score = 24.6 bits (51), Expect = 9.5
Identities = 7/9 (77%), Positives = 8/9 (88%)
Frame = +1
Query: 184 VRWYCSHQL 210
+RWYC HQL
Sbjct: 237 IRWYCRHQL 245
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,399,293
Number of Sequences: 5004
Number of extensions: 51826
Number of successful extensions: 175
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 221892220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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