Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11p24f
(540 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0005 - 24890239-24891419,24891524-24891694,24891810-24892704 31 0.59
02_05_0004 - 24880826-24882033,24882106-24882276,24882360-24883203 31 0.78
08_02_0200 - 14179389-14180488,14180575-14180736,14180983-141813... 30 1.4
01_02_0116 - 11252220-11253313,11253398-11253559,11253977-112543... 30 1.4
02_04_0240 - 21194597-21194743,21195579-21195680,21195797-211958... 29 3.1
12_02_1104 + 26121288-26122200,26122324-26122506,26122841-26124009 27 9.6
11_01_0607 - 4837257-4837447,4837526-4837631,4837913-4838005,483... 27 9.6
07_01_0495 + 3722319-3722517,3723325-3723482,3723652-3723929,372... 27 9.6
04_04_0680 - 27217563-27220088 27 9.6
02_02_0017 - 6131265-6131284,6131654-6131774,6132011-6132146,613... 27 9.6
>02_05_0005 - 24890239-24891419,24891524-24891694,24891810-24892704
Length = 748
Score = 31.1 bits (67), Expect = 0.59
Identities = 18/43 (41%), Positives = 20/43 (46%)
Frame = +1
Query: 361 LRQGCEHRTSNTCHPLRPKHPAGCYYPTRCRNTPGYFCLICSD 489
L GC+ N C R K+P C P C NTPG F C D
Sbjct: 293 LLDGCQD--INECEDSRFKYP--CSVPGTCINTPGGFRCSCPD 331
>02_05_0004 - 24880826-24882033,24882106-24882276,24882360-24883203
Length = 740
Score = 30.7 bits (66), Expect = 0.78
Identities = 17/43 (39%), Positives = 20/43 (46%)
Frame = +1
Query: 361 LRQGCEHRTSNTCHPLRPKHPAGCYYPTRCRNTPGYFCLICSD 489
L GC+ N C R ++P C P C NTPG F C D
Sbjct: 276 LLDGCQD--INECDESRFRYP--CSVPGTCVNTPGGFTCTCPD 314
>08_02_0200 -
14179389-14180488,14180575-14180736,14180983-14181383,
14182078-14182272,14182980-14183094,14183180-14183428,
14184032-14184093,14184335-14184435,14184701-14184815,
14185211-14185302,14187619-14187777
Length = 916
Score = 29.9 bits (64), Expect = 1.4
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -2
Query: 224 LKGSGSW*EQYQRTVGTIDSRWV 156
+KG W +YQR GTID W+
Sbjct: 701 VKGLDEWPNEYQRQYGTIDLYWI 723
>01_02_0116 -
11252220-11253313,11253398-11253559,11253977-11254306,
11254328-11254377,11255195-11255389,11255532-11255625,
11255713-11255961,11256831-11256892,11257434-11257534,
11257766-11257880,11258384-11258475,11259197-11259333,
11259721-11259760
Length = 906
Score = 29.9 bits (64), Expect = 1.4
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -2
Query: 224 LKGSGSW*EQYQRTVGTIDSRWV 156
+KG W +YQR GTID W+
Sbjct: 693 VKGLDEWPNEYQRQYGTIDLYWI 715
>02_04_0240 -
21194597-21194743,21195579-21195680,21195797-21195875,
21195921-21196043,21196135-21196193,21196453-21196974,
21197434-21198177,21198426-21198506
Length = 618
Score = 28.7 bits (61), Expect = 3.1
Identities = 19/62 (30%), Positives = 30/62 (48%)
Frame = +3
Query: 123 SIPAWSKLKYSYPS*INGSNSALVLFSPTTTTFQLLPVSMENSTILHTVALSLDLPVAVS 302
S+P + K S+ S + SNS F + ++P S + ++ LHT +SL VS
Sbjct: 400 SLPRAAVNKGSHVSHVALSNSTTQKFVTSHPKHSVMPNSSQRASTLHTTQVSLKRSAGVS 459
Query: 303 PV 308
V
Sbjct: 460 SV 461
>12_02_1104 + 26121288-26122200,26122324-26122506,26122841-26124009
Length = 754
Score = 27.1 bits (57), Expect = 9.6
Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 3/48 (6%)
Frame = +1
Query: 361 LRQGCEHRTSNTCHPLRPKHPAGCYYPTR---CRNTPGYFCLICSDGE 495
L GC+ L PK+ YP R C+NTPG + C G+
Sbjct: 299 LSDGCQDIDECEMRKLDPKYEE--LYPCRKGVCQNTPGSYICKCKKGK 344
>11_01_0607 -
4837257-4837447,4837526-4837631,4837913-4838005,
4838405-4838542,4838651-4838778,4838889-4839049,
4839145-4839235,4841437-4841602
Length = 357
Score = 27.1 bits (57), Expect = 9.6
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = +3
Query: 195 LFSPTTTTFQLLPVSMENSTILH-TVALSLDLPVAVSPVKYLMFTLL 332
LF P T F L+ + ++ I + AL VSP+ Y+MFT L
Sbjct: 203 LFYPQTWAFALIVATCVSTQINYLNKALDTFNTAVVSPIYYVMFTSL 249
>07_01_0495 +
3722319-3722517,3723325-3723482,3723652-3723929,
3723946-3724474
Length = 387
Score = 27.1 bits (57), Expect = 9.6
Identities = 15/34 (44%), Positives = 17/34 (50%)
Frame = +1
Query: 391 NTCHPLRPKHPAGCYYPTRCRNTPGYFCLICSDG 492
N C L PK GCY C NTPG + +C G
Sbjct: 69 NEC--LHPKE-YGCY--GNCMNTPGGYTCVCPPG 97
>04_04_0680 - 27217563-27220088
Length = 841
Score = 27.1 bits (57), Expect = 9.6
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +1
Query: 409 RPKHPAGCYYPTRCRNTPGYFCLICSDGELPF 504
+P PAGC C ++ C + + GE+PF
Sbjct: 602 QPAPPAGCGCVGGCSDSKRCACAVKNGGEIPF 633
>02_02_0017 -
6131265-6131284,6131654-6131774,6132011-6132146,
6132423-6132529,6133006-6133099,6133199-6133395,
6134401-6134472,6135128-6135304,6135393-6135467,
6135557-6135697,6136439-6136627,6136969-6137034,
6137118-6137268,6137596-6137664,6138751-6138899,
6138969-6139100,6139198-6139523,6139599-6139635,
6139765-6139803,6140196-6140250,6140363-6140424,
6140512-6140532,6140820-6140822
Length = 812
Score = 27.1 bits (57), Expect = 9.6
Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Frame = +1
Query: 403 PLRPKHPAGC-YYPTRCRNTP-GYFCLICSDGE 495
PL K C YP R+ P G F ++C DGE
Sbjct: 356 PLAVKELGTCDLYPQSLRHNPNGRFVVVCGDGE 388
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,460,859
Number of Sequences: 37544
Number of extensions: 371778
Number of successful extensions: 982
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 962
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 981
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1198356516
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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