Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11p24f
(540 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_56478| Best HMM Match : Trypsin (HMM E-Value=0) 33 0.11
SB_15907| Best HMM Match : Aldedh (HMM E-Value=3.2e-23) 33 0.20
SB_50354| Best HMM Match : Trypsin (HMM E-Value=0.0028) 33 0.20
SB_42973| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.60
SB_11023| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.80
SB_43527| Best HMM Match : Trypsin (HMM E-Value=0) 30 1.4
SB_48258| Best HMM Match : Kelch_1 (HMM E-Value=0) 28 5.6
SB_22064| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.6
SB_41561| Best HMM Match : Merozoite_SPAM (HMM E-Value=0.28) 27 9.8
SB_37182| Best HMM Match : DUF225 (HMM E-Value=1) 27 9.8
SB_24224| Best HMM Match : Lectin_C (HMM E-Value=0) 27 9.8
SB_15415| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.8
SB_39378| Best HMM Match : VWA (HMM E-Value=0) 27 9.8
SB_13096| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.8
SB_11235| Best HMM Match : Trypsin (HMM E-Value=1.1e-08) 27 9.8
>SB_56478| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 968
Score = 33.5 bits (73), Expect = 0.11
Identities = 14/76 (18%), Positives = 35/76 (46%), Gaps = 3/76 (3%)
Frame = +2
Query: 185 CAGIVLTNYHYLSTATCFHGEFYDPAYRRIIAGSSRRSEPGEISYVHFA---VNHPEFSE 355
C G +++ ++ A C G + P+Y +++ G R+ P H + HP ++
Sbjct: 93 CGGSLVSPTWVVTAAHCIAGSSHTPSY-KVVTGEHIRNSPEGTEQTHDVKRIITHPTYNS 151
Query: 356 ENYDKDVSIVRVTHAI 403
D++++ ++ +
Sbjct: 152 PQLSNDIALIELSSPV 167
>SB_15907| Best HMM Match : Aldedh (HMM E-Value=3.2e-23)
Length = 275
Score = 32.7 bits (71), Expect = 0.20
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Frame = -3
Query: 340 MVNSK-VNIRYFTGLTATGRSSDNATVCRIVEFSMETGSS*KVVVVGENNTSALLE 176
M+NS+ +N FTG TGR AT +V+ +E GS ++V+ + + +E
Sbjct: 215 MINSRGINALTFTGSLETGRKVAAATAVNLVKCQLEMGSKNALIVLDDADLDNAVE 270
>SB_50354| Best HMM Match : Trypsin (HMM E-Value=0.0028)
Length = 333
Score = 32.7 bits (71), Expect = 0.20
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Frame = +2
Query: 146 EVFLPILNQW--FQQCAGIVLTNYHYLSTATCFH-GEFYDPAYRRIIAGSSRRSEPGEIS 316
E F+ + W QC+G ++ H ++ A C H G+++ I+ G S S E+
Sbjct: 138 EPFVSSVKLWSDVMQCSGTLIGPCHVITAAHCIHNGKWFVSPLTAILVGVSNTSSTDELD 197
Query: 317 YVHFAV 334
Y FAV
Sbjct: 198 Y--FAV 201
>SB_42973| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1864
Score = 31.1 bits (67), Expect = 0.60
Identities = 20/91 (21%), Positives = 41/91 (45%), Gaps = 3/91 (3%)
Frame = +2
Query: 146 EVFLPILNQWFQQCAGIVLTNYHYLSTATCFHGEFYDPAYRRIIAGSS---RRSEPGEIS 316
+V L + Q+C G ++ L+ A CF F P + G S RR G+
Sbjct: 1253 QVALTLSGNPVQRCGGALIAADWVLTAAHCF-DRFSMPPEWTVQVGVSDMRRRDGKGQSL 1311
Query: 317 YVHFAVNHPEFSEENYDKDVSIVRVTHAIHF 409
+ HP+++ +++ D++++++ F
Sbjct: 1312 SIKAIFVHPQYNSSSHEHDLAVLQLQQPAEF 1342
>SB_11023| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 669
Score = 30.7 bits (66), Expect = 0.80
Identities = 12/80 (15%), Positives = 34/80 (42%), Gaps = 2/80 (2%)
Frame = +2
Query: 176 FQQCAGIVLTNYHYLSTATCFHGEFYDPAYRRIIAGSSRRSEPGEISYVHFA--VNHPEF 349
F C G ++++ ++ A C H Y ++ +R + + + HP++
Sbjct: 129 FHTCGGSLISDRWVVTAAHCIHRNKNPGGYTVVVGAHKKRGSTSVQQSLRLSQIIEHPKY 188
Query: 350 SEENYDKDVSIVRVTHAIHF 409
++ D++++ + + F
Sbjct: 189 NDRRIVNDIALLELATPVQF 208
>SB_43527| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 366
Score = 29.9 bits (64), Expect = 1.4
Identities = 8/24 (33%), Positives = 17/24 (70%)
Frame = +2
Query: 338 HPEFSEENYDKDVSIVRVTHAIHF 409
HP +S ++YD D++++R+ + F
Sbjct: 199 HPHYSPDSYDSDIALIRLAQPVTF 222
>SB_48258| Best HMM Match : Kelch_1 (HMM E-Value=0)
Length = 473
Score = 27.9 bits (59), Expect = 5.6
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +2
Query: 131 SLVQIEVFLPILNQWFQQCAGIVLTNYHYLSTATCFHGEFY 253
+LV +E + P N+W ++ +LT Y STA G+ Y
Sbjct: 111 NLVSMERYDPSTNEWEEEAVAPMLTARKYFSTAV-LDGKLY 150
>SB_22064| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 398
Score = 27.9 bits (59), Expect = 5.6
Identities = 15/51 (29%), Positives = 25/51 (49%)
Frame = +3
Query: 201 SPTTTTFQLLPVSMENSTILHTVALSLDLPVAVSPVKYLMFTLLLTIPNSL 353
SP+T+ Q++P + + L T + S +LPV + FT IP +
Sbjct: 143 SPSTSVKQMVPNTQASRLCLQTTSASSNLPVTTQQSFRMTFTPPSMIPKPI 193
>SB_41561| Best HMM Match : Merozoite_SPAM (HMM E-Value=0.28)
Length = 1643
Score = 27.1 bits (57), Expect = 9.8
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -1
Query: 87 VQLQTAASTATAKVRTETIVPIESNGDL 4
V ++T TA K E P+ESN DL
Sbjct: 342 VSMETEDGTANPKADVEMDAPVESNNDL 369
>SB_37182| Best HMM Match : DUF225 (HMM E-Value=1)
Length = 1282
Score = 27.1 bits (57), Expect = 9.8
Identities = 19/60 (31%), Positives = 25/60 (41%), Gaps = 2/60 (3%)
Frame = +1
Query: 208 LPLPFNCYLFPWRILRS-CIPSHYRW-IFPSQ*AR*NILCSLCC*PSRIL*GELRQGCEH 381
+P+ +C P +L S C PS +FP I CS C P R+L C H
Sbjct: 755 IPIACSCRCVPHHVLMSMCFPSRAHVDVFP-------ITCSCRCVPHRVLMSMCSPSCAH 807
>SB_24224| Best HMM Match : Lectin_C (HMM E-Value=0)
Length = 2726
Score = 27.1 bits (57), Expect = 9.8
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +3
Query: 126 IPAWSKLKYSYPS*INGSNSALVLFSPTTTT 218
IP+WS L S+PS + +SA SP TT
Sbjct: 862 IPSWSSLSSSFPSLSSRLSSASSSASPPGTT 892
>SB_15415| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1390
Score = 27.1 bits (57), Expect = 9.8
Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = -1
Query: 165 KMGRNTSIWTRLGC-SPIDTGLPRSLAVQLQTAASTATAKVRTETIVPIESNG 10
K+G+ TS + + + G+P S ++++TA ++ K+R P+E NG
Sbjct: 579 KLGKFTSYRVSVSAFTSVGDGVP-SAEMKIKTAEDISSRKIRVRWDTPMEPNG 630
>SB_39378| Best HMM Match : VWA (HMM E-Value=0)
Length = 2865
Score = 27.1 bits (57), Expect = 9.8
Identities = 14/41 (34%), Positives = 18/41 (43%)
Frame = +1
Query: 370 GCEHRTSNTCHPLRPKHPAGCYYPTRCRNTPGYFCLICSDG 492
GC +R +P +P CY C N G + CSDG
Sbjct: 1436 GCINRLIADIDECQPSNP--CYNGGTCVNEEGAYSCQCSDG 1474
>SB_13096| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1465
Score = 27.1 bits (57), Expect = 9.8
Identities = 8/19 (42%), Positives = 14/19 (73%)
Frame = +2
Query: 335 NHPEFSEENYDKDVSIVRV 391
+HP FS YD D++++R+
Sbjct: 1249 SHPRFSWRTYDSDIALIRL 1267
>SB_11235| Best HMM Match : Trypsin (HMM E-Value=1.1e-08)
Length = 235
Score = 27.1 bits (57), Expect = 9.8
Identities = 19/72 (26%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
Frame = +2
Query: 185 CAGIVLTNYHYLSTATCFHGEFYDPAYRRIIAGSSRRSEPG--EISYVHFAVNHPEFSEE 358
C +L+ L+ A C +PA + AG+ RR ++ V ++H EFS
Sbjct: 111 CGASLLSPGWALTAAHCVQRSS-NPADYTLAAGAHRRVNDAHAQVLRVSQVISHKEFSMG 169
Query: 359 NYDKDVSIVRVT 394
+ DV+++R++
Sbjct: 170 HLRNDVTLLRLS 181
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,610,359
Number of Sequences: 59808
Number of extensions: 425669
Number of successful extensions: 1094
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 984
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1093
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1227799733
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -