Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11p24f
(540 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z66498-2|CAA91291.2| 419|Caenorhabditis elegans Hypothetical pr... 32 0.30
AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density l... 31 0.70
Z70681-1|CAA94580.1| 307|Caenorhabditis elegans Hypothetical pr... 30 0.93
U80837-5|AAB37901.1| 455|Caenorhabditis elegans Hypothetical pr... 30 1.2
U51993-4|AAB36854.2| 540|Caenorhabditis elegans Hypothetical pr... 29 1.6
U28941-5|AAM98026.2| 989|Caenorhabditis elegans Hypothetical pr... 29 1.6
AY314775-1|AAQ84882.1| 971|Caenorhabditis elegans methuselah-li... 29 1.6
U97550-1|AAK18983.2| 1065|Caenorhabditis elegans Hypothetical pr... 28 3.7
Z93397-3|CAB07720.2| 376|Caenorhabditis elegans Hypothetical pr... 28 4.9
Z74028-6|CAI91174.1| 674|Caenorhabditis elegans Hypothetical pr... 27 6.5
Z74028-5|CAA98427.1| 677|Caenorhabditis elegans Hypothetical pr... 27 6.5
AY733040-1|AAW57534.1| 1425|Caenorhabditis elegans death-associa... 27 8.6
AF043701-1|AAK18971.2| 1425|Caenorhabditis elegans Dap (death-as... 27 8.6
>Z66498-2|CAA91291.2| 419|Caenorhabditis elegans Hypothetical
protein M195.2 protein.
Length = 419
Score = 31.9 bits (69), Expect = 0.30
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +1
Query: 373 CEHRTSNTCHPLRPKHPAGCYYPTRCRNTPGYFC 474
C+ +N+C L P+ GC PT CRNT C
Sbjct: 275 CQTGCANSCAQLSPQPTEGC--PTNCRNTCNEVC 306
>AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density
lipoprotein receptorrelated protein 2 protein.
Length = 2192
Score = 30.7 bits (66), Expect = 0.70
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
Frame = +1
Query: 373 CEHRTS--NT-CHPLRPKHPAGCYYPTRCRNTPGY 468
CE + NT C P+ K P C+ RC +TPGY
Sbjct: 1863 CEQNAAAHNTDCSPICQKQPNWCHNGGRCLDTPGY 1897
Score = 29.1 bits (62), Expect = 2.1
Identities = 15/40 (37%), Positives = 18/40 (45%)
Frame = +1
Query: 373 CEHRTSNTCHPLRPKHPAGCYYPTRCRNTPGYFCLICSDG 492
CE T+ +CH L K+ C P N CL CS G
Sbjct: 1985 CEKITATSCHQLECKNGGYCLKPDPSANRTSPTCL-CSPG 2023
>Z70681-1|CAA94580.1| 307|Caenorhabditis elegans Hypothetical
protein C30F2.1 protein.
Length = 307
Score = 30.3 bits (65), Expect = 0.93
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = +1
Query: 397 CHPLRPKHPAGCYYPTRCRNTPG 465
C P+RPK P G P CR PG
Sbjct: 102 CEPIRPKCPPGPPGPPGCRGEPG 124
>U80837-5|AAB37901.1| 455|Caenorhabditis elegans Hypothetical
protein F07E5.1 protein.
Length = 455
Score = 29.9 bits (64), Expect = 1.2
Identities = 15/27 (55%), Positives = 19/27 (70%)
Frame = +3
Query: 150 YSYPS*INGSNSALVLFSPTTTTFQLL 230
YSYPS I +S +V+ + TTTTF LL
Sbjct: 75 YSYPSPIVLEHSFVVMTTTTTTTFSLL 101
>U51993-4|AAB36854.2| 540|Caenorhabditis elegans Hypothetical
protein F56F10.1 protein.
Length = 540
Score = 29.5 bits (63), Expect = 1.6
Identities = 24/82 (29%), Positives = 37/82 (45%), Gaps = 3/82 (3%)
Frame = -3
Query: 499 VVPHPSRSNKNTLGYYDTLLDNSTL---LDVWAEVDGMCYSYDAHILVVILLREFGMVNS 329
V+P+ S + LG Y T+ S L ++ A M SYD ++ R F N
Sbjct: 446 VLPNGSLDPWHALGTYGTIKSQSLLPYLINGTAHCGDMYPSYDGEPGSLLAARAFVKENV 505
Query: 328 KVNIRYFTGLTATGRSSDNATV 263
+ IRY + G SS +A++
Sbjct: 506 RQFIRYDPNVDGPGGSSSSASL 527
>U28941-5|AAM98026.2| 989|Caenorhabditis elegans Hypothetical
protein F31D5.4 protein.
Length = 989
Score = 29.5 bits (63), Expect = 1.6
Identities = 26/101 (25%), Positives = 44/101 (43%), Gaps = 1/101 (0%)
Frame = +3
Query: 153 SYPS*INGSNSALVLFSPTTTTFQLLPVSMENSTILHTVAL-SLDLPVAVSPVKYLMFTL 329
S PS S++ + TTT ++P + +TI T + S+ V+ T+
Sbjct: 220 STPSSTEASSTVTSTTTARTTT-TMIPTTPTTTTIASTSTVTSIVTSTTVTSTTVPTTTV 278
Query: 330 LLTIPNSLRRITTRM*ASYE*HMPSTSAQTSSRVLLSNKVS 452
+ T+P + T+ AS PSTS T++ +N S
Sbjct: 279 VTTVPTTTATSTSTSTASTTTTTPSTSTHTTTVTYSTNATS 319
>AY314775-1|AAQ84882.1| 971|Caenorhabditis elegans methuselah-like
protein MTH-2 protein.
Length = 971
Score = 29.5 bits (63), Expect = 1.6
Identities = 26/101 (25%), Positives = 44/101 (43%), Gaps = 1/101 (0%)
Frame = +3
Query: 153 SYPS*INGSNSALVLFSPTTTTFQLLPVSMENSTILHTVAL-SLDLPVAVSPVKYLMFTL 329
S PS S++ + TTT ++P + +TI T + S+ V+ T+
Sbjct: 202 STPSSTEASSTVTSTTTARTTT-TMIPTTPTTTTIASTSTVTSIVTSTTVTSTTVPTTTV 260
Query: 330 LLTIPNSLRRITTRM*ASYE*HMPSTSAQTSSRVLLSNKVS 452
+ T+P + T+ AS PSTS T++ +N S
Sbjct: 261 VTTVPTTTATSTSTSTASTTTTTPSTSTHTTTVTYSTNATS 301
>U97550-1|AAK18983.2| 1065|Caenorhabditis elegans Hypothetical protein
T20F7.5 protein.
Length = 1065
Score = 28.3 bits (60), Expect = 3.7
Identities = 20/62 (32%), Positives = 31/62 (50%)
Frame = -3
Query: 241 METGSS*KVVVVGENNTSALLEPLIQDG*EYFNLDQAGMLANRHRSTEIASSAAADGSEH 62
+E SS V E+ +EP++++ +Y +LD M + RHRS +I S D H
Sbjct: 907 LERKSSSTVPEKNEDELRVEIEPIMKELSDYESLD---MRSIRHRSDKIDSYFDLDSEFH 963
Query: 61 SY 56
Y
Sbjct: 964 DY 965
>Z93397-3|CAB07720.2| 376|Caenorhabditis elegans Hypothetical
protein ZC482.6 protein.
Length = 376
Score = 27.9 bits (59), Expect = 4.9
Identities = 19/71 (26%), Positives = 30/71 (42%)
Frame = +2
Query: 170 QWFQQCAGIVLTNYHYLSTATCFHGEFYDPAYRRIIAGSSRRSEPGEISYVHFAVNHPEF 349
++F+Q VLT + S A CF F YR + R P + + +V HP
Sbjct: 307 RFFEQAQSFVLTFQIFNSVAHCFICFFLSSQYRETVKTMIRIKTPPTVMVLESSV-HPTT 365
Query: 350 SEENYDKDVSI 382
E + ++ I
Sbjct: 366 RETSKTSNLVI 376
>Z74028-6|CAI91174.1| 674|Caenorhabditis elegans Hypothetical
protein C14C10.3b protein.
Length = 674
Score = 27.5 bits (58), Expect = 6.5
Identities = 14/33 (42%), Positives = 22/33 (66%)
Frame = -3
Query: 154 EYFNLDQAGMLANRHRSTEIASSAAADGSEHSY 56
E F+LD G+L+ + +S E SSA G+EH++
Sbjct: 57 EVFSLDDFGLLSMKSQSLESISSA---GNEHNF 86
>Z74028-5|CAA98427.1| 677|Caenorhabditis elegans Hypothetical
protein C14C10.3a protein.
Length = 677
Score = 27.5 bits (58), Expect = 6.5
Identities = 14/33 (42%), Positives = 22/33 (66%)
Frame = -3
Query: 154 EYFNLDQAGMLANRHRSTEIASSAAADGSEHSY 56
E F+LD G+L+ + +S E SSA G+EH++
Sbjct: 57 EVFSLDDFGLLSMKSQSLESISSA---GNEHNF 86
>AY733040-1|AAW57534.1| 1425|Caenorhabditis elegans death-associated
protein kinase protein.
Length = 1425
Score = 27.1 bits (57), Expect = 8.6
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = -3
Query: 220 KVVVVGENNTSALLEPLIQDG*EYFNLDQAGML 122
KV++VG + TS+L + Q+G EY + D ML
Sbjct: 875 KVIIVGTHATSSLFPQMNQEG-EYVSSDIEAML 906
>AF043701-1|AAK18971.2| 1425|Caenorhabditis elegans Dap
(death-associated protein)kinase homolog protein 1
protein.
Length = 1425
Score = 27.1 bits (57), Expect = 8.6
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = -3
Query: 220 KVVVVGENNTSALLEPLIQDG*EYFNLDQAGML 122
KV++VG + TS+L + Q+G EY + D ML
Sbjct: 875 KVIIVGTHATSSLFPQMNQEG-EYVSSDIEAML 906
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,422,602
Number of Sequences: 27780
Number of extensions: 301039
Number of successful extensions: 806
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 784
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 806
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1081316076
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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