Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11p24f
(540 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g18640.2 68414.m02324 3-phosphoserine phosphatase (PSP) nearl... 32 0.28
At1g18640.1 68414.m02323 3-phosphoserine phosphatase (PSP) nearl... 32 0.28
At5g56280.1 68418.m07024 COP9 signalosome subunit 6 / CSN subuni... 31 0.37
At1g30450.3 68414.m03722 cation-chloride cotransporter, putative... 30 0.86
At1g30450.2 68414.m03721 cation-chloride cotransporter, putative... 30 0.86
At1g30450.1 68414.m03720 cation-chloride cotransporter, putative... 30 0.86
At4g26430.1 68417.m03803 COP9 signalosome subunit 6 / CSN subuni... 28 4.6
At4g11530.1 68417.m01850 protein kinase family protein contains ... 28 4.6
At4g33600.1 68417.m04773 expressed protein 27 6.1
At2g01980.1 68415.m00133 sodium proton exchanger, putative (NHX7... 27 6.1
At4g11510.1 68417.m01849 expressed protein ; expression support... 27 8.0
At3g12720.1 68416.m01589 myb family transcription factor contain... 27 8.0
At1g79990.1 68414.m09356 coatomer protein complex, subunit beta ... 27 8.0
>At1g18640.2 68414.m02324 3-phosphoserine phosphatase (PSP) nearly
identical to 3-phosphoserine phosphatase GI:3759177 from
[Arabidopsis thaliana]
Length = 295
Score = 31.9 bits (69), Expect = 0.28
Identities = 10/35 (28%), Positives = 22/35 (62%)
Frame = -3
Query: 469 NTLGYYDTLLDNSTLLDVWAEVDGMCYSYDAHILV 365
+TLG+ ++ + +LD+W V+ +C+ D+ + V
Sbjct: 62 STLGHEGNIVPSKEILDLWRSVEAVCFDVDSTVCV 96
>At1g18640.1 68414.m02323 3-phosphoserine phosphatase (PSP) nearly
identical to 3-phosphoserine phosphatase GI:3759177 from
[Arabidopsis thaliana]
Length = 295
Score = 31.9 bits (69), Expect = 0.28
Identities = 10/35 (28%), Positives = 22/35 (62%)
Frame = -3
Query: 469 NTLGYYDTLLDNSTLLDVWAEVDGMCYSYDAHILV 365
+TLG+ ++ + +LD+W V+ +C+ D+ + V
Sbjct: 62 STLGHEGNIVPSKEILDLWRSVEAVCFDVDSTVCV 96
>At5g56280.1 68418.m07024 COP9 signalosome subunit 6 / CSN subunit 6
(CSN6A) identical to CSN complex subunit 6A [Arabidopsis
thaliana] GI:18056665, COP9 complex subunit 6
[Arabidopsis thaliana] GI:15809663; contains Pfam
profile PF01398: Mov34/MPN/PAD-1 family; identical to
cDNA CSN complex subunit 6A (CSN6A) GI:18056664
Length = 317
Score = 31.5 bits (68), Expect = 0.37
Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = +3
Query: 408 SAQTSSRVLLSNKVS*YPRVFL-FDLLGWGTTVQGGSVSDGNLHK 539
S QT R L K Y +VF F +LGW +T SD ++HK
Sbjct: 84 STQTLDRSFLEKKQELYKKVFPDFYILGWYSTGSDAEESDMHIHK 128
>At1g30450.3 68414.m03722 cation-chloride cotransporter, putative
similar to cation-chloride co-transporter GB:AAC49874
GI:2582381 from [Nicotiana tabacum], Cation-Chloride
Cotransporter (CCC) Family Member, PMID:11500563
Length = 975
Score = 30.3 bits (65), Expect = 0.86
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -2
Query: 224 LKGSGSW*EQYQRTVGTIDSRWV 156
+KG W +YQR GTID W+
Sbjct: 767 IKGLDEWPNEYQRQYGTIDLYWI 789
>At1g30450.2 68414.m03721 cation-chloride cotransporter, putative
similar to cation-chloride co-transporter GB:AAC49874
GI:2582381 from [Nicotiana tabacum], Cation-Chloride
Cotransporter (CCC) Family Member, PMID:11500563
Length = 975
Score = 30.3 bits (65), Expect = 0.86
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -2
Query: 224 LKGSGSW*EQYQRTVGTIDSRWV 156
+KG W +YQR GTID W+
Sbjct: 767 IKGLDEWPNEYQRQYGTIDLYWI 789
>At1g30450.1 68414.m03720 cation-chloride cotransporter, putative
similar to cation-chloride co-transporter GB:AAC49874
GI:2582381 from [Nicotiana tabacum], Cation-Chloride
Cotransporter (CCC) Family Member, PMID:11500563
Length = 975
Score = 30.3 bits (65), Expect = 0.86
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -2
Query: 224 LKGSGSW*EQYQRTVGTIDSRWV 156
+KG W +YQR GTID W+
Sbjct: 767 IKGLDEWPNEYQRQYGTIDLYWI 789
>At4g26430.1 68417.m03803 COP9 signalosome subunit 6 / CSN subunit 6
(CSN6B) identical to COP9 signalosome subunit 6
[Arabidopsis thaliana] GI:17940314, CSN complex subunit
6B [Arabidopsis thaliana] GI:18056667; contains Pfam
profile PF01398: Mov34/MPN/PAD-1 family; supporting cDNA
gi|17940313|gb|AF434762.1|AF434762; identical to cDNA
CSN complex subunit 6B (CSN6B) GI:18056666
Length = 317
Score = 27.9 bits (59), Expect = 4.6
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = +3
Query: 417 TSSRVLLSNKVS*YPRVFL-FDLLGWGTTVQGGSVSDGNLHK 539
T R L K Y +VF F +LGW +T + SD ++HK
Sbjct: 87 TLDRSFLEKKQELYKKVFPDFYVLGWYSTGSDATESDMHIHK 128
>At4g11530.1 68417.m01850 protein kinase family protein contains
Pfam PF00069: Protein kinase domain
Length = 931
Score = 27.9 bits (59), Expect = 4.6
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
Frame = +2
Query: 161 ILNQWFQQCAGIVLTNYHYLSTATCFHGEF-----YDPAYRRIIA 280
+LN F L + Y+ST TCF+G F YD RRI++
Sbjct: 2 MLNTLFLPIFLFFLITFDYVSTQTCFNGYFKPNGTYDLNRRRILS 46
>At4g33600.1 68417.m04773 expressed protein
Length = 453
Score = 27.5 bits (58), Expect = 6.1
Identities = 13/31 (41%), Positives = 15/31 (48%)
Frame = +1
Query: 163 LESMVPTVRWYCSHQLPLPFNCYLFPWRILR 255
L +MVP V W HQ P L+ W LR
Sbjct: 183 LSAMVPFVAWSLRHQCENPQRWVLYHWGELR 213
>At2g01980.1 68415.m00133 sodium proton exchanger, putative (NHX7)
(SOS1) identical to putative Na+/H+ antiporter SOS1
[Arabidopsis thaliana] gi|8515714|gb|AAF76139; Member of
The Monovalent Cation:Proton Antiporter (CPA1) Family,
PMID:11500563
Length = 1146
Score = 27.5 bits (58), Expect = 6.1
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = -3
Query: 490 HPSRSNKNTLGYYDTLLDNSTLLDVWAEVDGMCYSYDA 377
HP+ S+ +TLG Y+ L L D+ + +C+ D+
Sbjct: 800 HPTFSHGSTLGLYEVLTGKPYLCDLITDSMVLCFFIDS 837
>At4g11510.1 68417.m01849 expressed protein ; expression supported
by MPSS
Length = 85
Score = 27.1 bits (57), Expect = 8.0
Identities = 12/33 (36%), Positives = 15/33 (45%)
Frame = +1
Query: 355 GELRQGCEHRTSNTCHPLRPKHPAGCYYPTRCR 453
G+ + GC+H P P H GC RCR
Sbjct: 42 GDRQPGCDHGNCPPDQPANPYH-RGCEKSKRCR 73
>At3g12720.1 68416.m01589 myb family transcription factor contains
PFAM profile: PF00249 myb-like DNA binding domain
Length = 307
Score = 27.1 bits (57), Expect = 8.0
Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 5/46 (10%)
Frame = -3
Query: 517 TLPP*TVVP-HPSRSNKNTL----GYYDTLLDNSTLLDVWAEVDGM 395
T+P TV+P + + S+ T+ +LLD+ ++ W++VDGM
Sbjct: 199 TIPSQTVIPINDNMSSTQTMIPINDPMSSLLDDENMIPHWSDVDGM 244
>At1g79990.1 68414.m09356 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); similar to Coatomer beta' subunit
(Beta'-coat protein) (Beta'-COP) (p102) (SP:P35606)
[Homo sapiens]; similar to Coatomer beta' subunit
(Beta'-coat protein) (Beta'-COP) (p102) (SP:O55029) [Mus
musculus]
Length = 920
Score = 27.1 bits (57), Expect = 8.0
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Frame = +1
Query: 370 GCEHRTSNTCHPLRPKHPAGC-YYPTRCRNTP-GYFCLICSDGE 495
G + T PL K C YP ++ P G F ++C DGE
Sbjct: 331 GADEVTDGERLPLAVKELGTCDLYPQSLKHNPNGRFVVVCGDGE 374
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,760,917
Number of Sequences: 28952
Number of extensions: 280719
Number of successful extensions: 766
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 745
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 766
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1003808112
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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