Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11p23r
(465 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_05_0279 - 23794964-23795111,23795486-23795634,23796120-237962... 79 1e-15
01_06_1123 + 34671365-34671883,34672366-34672625,34673045-346731... 78 4e-15
07_01_0849 + 6896930-6896996,6897453-6897474,6897615-6897690,689... 76 1e-14
07_01_1199 + 11391638-11391718,11393477-11393590,11393690-113938... 61 5e-10
01_05_0105 - 18155135-18155297,18155379-18155515,18155621-181557... 38 0.003
10_08_0655 - 19621717-19622594,19623186-19623227,19624323-196244... 28 4.3
12_02_0123 - 13930138-13932471 27 9.8
04_04_1400 - 33259716-33260069,33260172-33260219,33260471-332605... 27 9.8
03_01_0649 + 4757352-4758167 27 9.8
>05_05_0279 -
23794964-23795111,23795486-23795634,23796120-23796221,
23796309-23796384,23796578-23796588
Length = 161
Score = 79.4 bits (187), Expect = 1e-15
Identities = 42/101 (41%), Positives = 53/101 (52%), Gaps = 1/101 (0%)
Frame = -3
Query: 442 MKIGLCAYSGYKIYPGHGKTMVKVDGKTFTFLNSKCEAAHLMRRNPRKVTWTVLYRRKFK 263
+K LC +SG KIYPG G ++ D + F F NSKC+ R P K+TWT +YR++ K
Sbjct: 3 LKTELCRFSGQKIYPGKGIRFIRADSQVFLFANSKCKRYFHNRLKPAKLTWTAMYRKQHK 62
Query: 262 KG-QEEEXXXXXXXXXXXXXXAIVGASLSDIMAKRNMKPEV 143
K E +IVGASL I KR KPEV
Sbjct: 63 KDIHAEAVKKRRRTTKKPYSRSIVGASLEVIQKKRAEKPEV 103
>01_06_1123 + 34671365-34671883,34672366-34672625,34673045-34673143,
34673237-34675178,34675588-34675658,34676158-34676307,
34676963-34677038,34677131-34677232,34677707-34677855,
34678214-34678364
Length = 1172
Score = 77.8 bits (183), Expect = 4e-15
Identities = 40/97 (41%), Positives = 52/97 (53%), Gaps = 1/97 (1%)
Frame = -3
Query: 430 LCAYSGYKIYPGHGKTMVKVDGKTFTFLNSKCEAAHLMRRNPRKVTWTVLYRRKFKKG-Q 254
LC +SG KIYPG G ++ D + F F NSKC+ R P K+TWT +YR++ KK
Sbjct: 1017 LCRFSGQKIYPGKGIRFIRADSQVFLFANSKCKRYFHNRLKPAKLTWTAMYRKQHKKDIH 1076
Query: 253 EEEXXXXXXXXXXXXXXAIVGASLSDIMAKRNMKPEV 143
E +IVGA+L I KR+ KPEV
Sbjct: 1077 AEAVKKRRRTTKKPYSRSIVGATLEVIQKKRSEKPEV 1113
>07_01_0849 +
6896930-6896996,6897453-6897474,6897615-6897690,
6897775-6897876,6898156-6898304,6898637-6898784
Length = 187
Score = 76.2 bits (179), Expect = 1e-14
Identities = 41/103 (39%), Positives = 54/103 (52%), Gaps = 1/103 (0%)
Frame = -3
Query: 448 VKMKIGLCAYSGYKIYPGHGKTMVKVDGKTFTFLNSKCEAAHLMRRNPRKVTWTVLYRRK 269
+K+ LC +SG KIYPG G ++ D + F F NSKC+ R P K+TWT +YR++
Sbjct: 27 LKVWTELCRFSGAKIYPGKGIRFIRADSQVFLFSNSKCKRYFHNRLKPAKLTWTAMYRKQ 86
Query: 268 FKKG-QEEEXXXXXXXXXXXXXXAIVGASLSDIMAKRNMKPEV 143
KK E +IVGA+L I KR KPEV
Sbjct: 87 HKKDIHAEAVKKRRRTTKKPYSRSIVGATLEVIQKKRAEKPEV 129
>07_01_1199 +
11391638-11391718,11393477-11393590,11393690-11393826,
11393905-11394064
Length = 163
Score = 60.9 bits (141), Expect = 5e-10
Identities = 26/56 (46%), Positives = 32/56 (57%)
Frame = -3
Query: 442 MKIGLCAYSGYKIYPGHGKTMVKVDGKTFTFLNSKCEAAHLMRRNPRKVTWTVLYR 275
M++ C + +YPGHG V+ D K F F SKC M+RNPRKV WT YR
Sbjct: 1 MRLEKCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYR 56
>01_05_0105 -
18155135-18155297,18155379-18155515,18155621-18155734,
18155768-18155806,18156838-18156993
Length = 202
Score = 38.3 bits (85), Expect = 0.003
Identities = 16/28 (57%), Positives = 17/28 (60%)
Frame = -3
Query: 358 FTFLNSKCEAAHLMRRNPRKVTWTVLYR 275
F F SKC M+RNPRKV WT YR
Sbjct: 67 FRFCRSKCHKNFKMKRNPRKVKWTKAYR 94
>10_08_0655 -
19621717-19622594,19623186-19623227,19624323-19624479,
19625333-19625405,19625483-19625595
Length = 420
Score = 27.9 bits (59), Expect = 4.3
Identities = 18/65 (27%), Positives = 30/65 (46%)
Frame = -1
Query: 402 IQAMARPWLKWMEKPSHS*IQNVKPPI**GGILVK*HGLSCTGASSKRAKRKNKQRNVLE 223
+ M PW W +KPS I ++ P G L++ + T S A ++ + E
Sbjct: 154 LSKMIEPWTPWWKKPSARSI-SLSPD---GSQLIRQVSVEDTDTSDPMADPESSISEIPE 209
Query: 222 GPKSS 208
GP+S+
Sbjct: 210 GPESA 214
>12_02_0123 - 13930138-13932471
Length = 777
Score = 26.6 bits (56), Expect = 9.8
Identities = 21/71 (29%), Positives = 34/71 (47%)
Frame = -3
Query: 460 SFCQVKMKIGLCAYSGYKIYPGHGKTMVKVDGKTFTFLNSKCEAAHLMRRNPRKVTWTVL 281
+F V+M+ C G+K+ G+T V G + ++++K RR P WTV+
Sbjct: 130 TFGGVRMEDSGCVAGGFKV----GRTTV---GHSLVYVSTKAPVK--ARRTP----WTVV 176
Query: 280 YRRKFKKGQEE 248
YR G+ E
Sbjct: 177 YRTDLADGKTE 187
>04_04_1400 -
33259716-33260069,33260172-33260219,33260471-33260596,
33260850-33260900,33260963-33261055,33261217-33261272,
33261465-33261522,33262306-33262365,33262513-33262623,
33263368-33263949,33264026-33264097
Length = 536
Score = 26.6 bits (56), Expect = 9.8
Identities = 11/31 (35%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = -3
Query: 367 GKTFTFLNSKCEAAHL-MRRNPRKVTWTVLY 278
G L+S A H+ +RRNP+ + W ++Y
Sbjct: 469 GSAIRQLDSIFSAGHIFLRRNPKALVWAMVY 499
>03_01_0649 + 4757352-4758167
Length = 271
Score = 26.6 bits (56), Expect = 9.8
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +3
Query: 120 ACSLCALRTSGFILRLAIM 176
ACS CALRT G +L A++
Sbjct: 85 ACSPCALRTLGAVLAAALL 103
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,479,900
Number of Sequences: 37544
Number of extensions: 205256
Number of successful extensions: 441
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 426
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 438
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 931320312
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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