Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11p23r
         (465 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g53020.1 68416.m05844 60S ribosomal protein L24 (RPL24B) 60S ...    78   3e-15
At2g36620.1 68415.m04490 60S ribosomal protein L24 (RPL24A)            77   4e-15
At2g44860.1 68415.m05585 60S ribosomal protein L24, putative           60   7e-10
At1g30370.1 68414.m03713 lipase class 3 family protein similar t...    27   6.2  

>At3g53020.1 68416.m05844 60S ribosomal protein L24 (RPL24B) 60S
           ribosomal protein L24, Arabidopsis thaliana,
           EMBL:AC006282
          Length = 163

 Score = 77.8 bits (183), Expect = 3e-15
 Identities = 40/101 (39%), Positives = 54/101 (53%), Gaps = 1/101 (0%)
 Frame = -3

Query: 442 MKIGLCAYSGYKIYPGHGKTMVKVDGKTFTFLNSKCEAAHLMRRNPRKVTWTVLYRRKFK 263
           +K  LC +SG KIYPG G   ++ D + F FLNSKC+     +  P K+ WT +YR++ K
Sbjct: 3   LKTELCRFSGQKIYPGRGIRFIRSDSQVFLFLNSKCKRYFHNKLKPSKLAWTAMYRKQHK 62

Query: 262 K-GQEEEXXXXXXXXXXXXXXAIVGASLSDIMAKRNMKPEV 143
           K   +E               +IVGA+L  I  KR  KPEV
Sbjct: 63  KDAAQEAVKRRRRATKKPYSRSIVGATLEVIQKKRAEKPEV 103


>At2g36620.1 68415.m04490 60S ribosomal protein L24 (RPL24A)
          Length = 164

 Score = 77.4 bits (182), Expect = 4e-15
 Identities = 40/101 (39%), Positives = 54/101 (53%), Gaps = 1/101 (0%)
 Frame = -3

Query: 442 MKIGLCAYSGYKIYPGHGKTMVKVDGKTFTFLNSKCEAAHLMRRNPRKVTWTVLYRRKFK 263
           +K  LC +SG KIYPG G   ++ D + F FLNSKC+     +  P K+ WT +YR++ K
Sbjct: 3   LKTELCRFSGQKIYPGRGIRFIRSDSQVFLFLNSKCKRYFHNKLKPSKLCWTAMYRKQHK 62

Query: 262 K-GQEEEXXXXXXXXXXXXXXAIVGASLSDIMAKRNMKPEV 143
           K   +E               +IVGA+L  I  KR  KPEV
Sbjct: 63  KDAAQEAVKRRRRATKKPYSRSIVGATLEVIQKKRAEKPEV 103


>At2g44860.1 68415.m05585 60S ribosomal protein L24, putative
          Length = 159

 Score = 60.1 bits (139), Expect = 7e-10
 Identities = 27/66 (40%), Positives = 35/66 (53%)
 Frame = -3

Query: 442 MKIGLCAYSGYKIYPGHGKTMVKVDGKTFTFLNSKCEAAHLMRRNPRKVTWTVLYRRKFK 263
           M++  C +    IYPGHG   V+ D K F F  SKC     M+RNPRKV WT  +R    
Sbjct: 1   MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAFRAAHG 60

Query: 262 KGQEEE 245
           K   ++
Sbjct: 61  KDMTKD 66


>At1g30370.1 68414.m03713 lipase class 3 family protein similar to
           DEFECTIVE IN ANTHER DEHISCENCE1 [Arabidopsis thaliana]
           GI:16215706; contains Pfam profile: PF01764: Lipase
          Length = 529

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
 Frame = -3

Query: 394 HGKTMVKVDGKTFTFLNSKCEAAHLMRRNPRKVTWTVLYRR-KFKKGQEEE 245
           HGKT+VKV     +  NSK E     + +  + T   + R   F K + EE
Sbjct: 269 HGKTVVKVQSGFLSIYNSKSELTRYNKESASEQTMDEVKRLVNFFKDRGEE 319


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,543,153
Number of Sequences: 28952
Number of extensions: 167849
Number of successful extensions: 350
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 343
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 348
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 782033640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)