Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11p22r
         (715 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2F3.02 |||ER protein translocation subcomplex subunit|Schizo...    28   1.5  
SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma c...    27   2.7  
SPBC36.02c |||spermidine family transporter |Schizosaccharomyces...    27   3.5  
SPCC569.05c |||spermidine family transporter |Schizosaccharomyce...    26   4.7  
SPBC29A10.05 |exo1|mut2|exonuclease I Exo1|Schizosaccharomyces p...    26   6.1  
SPBC1718.02 |hop1||linear element associated protein Hop1|Schizo...    25   8.1  

>SPAC2F3.02 |||ER protein translocation subcomplex
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 192

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +3

Query: 336 AKSMCTSKYPVYCPALIPTATVNITTASTVS 428
           AKS+ T KYP + P   P A  N+  ++ V+
Sbjct: 33  AKSLATFKYPFFIPPPYPPAKPNMALSTQVN 63


>SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma
           catalytic subunit|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1018

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -1

Query: 562 PMGYMTDVIIRNKWLNVSNTRK 497
           PMG +T   + N WL  SN++K
Sbjct: 637 PMGTVTRRAVENTWLTASNSKK 658


>SPBC36.02c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 577

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 4/67 (5%)
 Frame = -1

Query: 340 LAPNFSASLMG--ITNFLANIIS--IIAPLVCGFIVNDETQPSEWRKVFFVASGVYFFGN 173
           LA  +S    G  IT F A +    +++P+V GF+         WR   ++ S + FF  
Sbjct: 249 LADMYSNKYRGTAITLFSAMVFDGPLVSPIVGGFLTKSYLG---WRWTEYITSFMGFFAL 305

Query: 172 LFFILFC 152
           +   LFC
Sbjct: 306 IIVYLFC 312


>SPCC569.05c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 576

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 33/140 (23%), Positives = 52/140 (37%), Gaps = 2/140 (1%)
 Frame = -1

Query: 565 FPMGYMTDVIIRNKWLNVSNTRKLFNTIGHWGPAIALIGLSYAPAGDXXXXXXXXXXXVG 386
           F  GY+   I+      +S  RKL   IG +G    +  +S A A D             
Sbjct: 179 FLCGYIAGPIVWAPLSELSG-RKLPLLIGMFG--FGIFNISVAVAKDIQTIMMCRFFSGF 235

Query: 385 INAGQYTGYLLVHIDLAPNFSASLMGITNFLANIIS--IIAPLVCGFIVNDETQPSEWRK 212
             +   T       D+  N       IT F A +    +++P++ GF+         WR 
Sbjct: 236 FASAPLTVVAAAFADMYSNKHRGT-AITIFAALVFDGPLVSPIIGGFLTKSYLG---WRW 291

Query: 211 VFFVASGVYFFGNLFFILFC 152
             ++ S + FF  +   LFC
Sbjct: 292 TEYITSFMGFFALVIVYLFC 311


>SPBC29A10.05 |exo1|mut2|exonuclease I Exo1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 571

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = +3

Query: 255 PQTKGAMIEIILAKKLVMPISDALKFGAKSMCTSKYPVYCP 377
           P+ + A+  + L K L +P+S   +F    +      VYCP
Sbjct: 246 PEPRAAIRAMRLDKSLKVPVSFEKEFALADLAFRHQRVYCP 286


>SPBC1718.02 |hop1||linear element associated protein
           Hop1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 528

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
 Frame = +2

Query: 182 EVYS*SHEEYFTPFRWLGLV--VNDEAANQRSDDRNNIGQE 298
           E+ S   E+YFTP RW+  +   N    NQR + R+ +  E
Sbjct: 460 EMVSYLREKYFTPSRWISHLNFQNYRQENQRVNMRSFLRPE 500


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,137,447
Number of Sequences: 5004
Number of extensions: 68052
Number of successful extensions: 181
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)