Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11p22r
         (715 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    29   0.058
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    23   2.2  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   3.8  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   5.0  
L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    21   8.8  

>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 28.7 bits (61), Expect = 0.058
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +2

Query: 65  CLPFSCLVFWFLRFNIRLLWFIPRL 139
           CL   CL FW    +  LLWFI ++
Sbjct: 387 CLTVVCLAFWSFIVSTILLWFINKI 411


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -1

Query: 211 VFFVASGVYFFGNLFFILFCTSKRQP 134
           V F+A+G++  GN    LF    R P
Sbjct: 325 VDFIAAGIHTLGNTLVFLFDLIGRNP 350


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 10/41 (24%), Positives = 17/41 (41%)
 Frame = -3

Query: 452 WLIIRAGRRHSTGCRDVNSGSRYQCWAVHRILASTHRFGSK 330
           +L++ +G  H       +    YQC   HR+   T    +K
Sbjct: 157 YLVLPSGELHIRDVGPEDGYKTYQCRTKHRLTGETRLSATK 197


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 8/28 (28%), Positives = 15/28 (53%)
 Frame = -3

Query: 584 IHVYPEFPHGLHDRRDYKEQVVERVQYE 501
           I ++P+   G HD R +  Q++    Y+
Sbjct: 170 ITIFPQRTDGKHDYRVWNHQLISYAGYK 197


>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 7/24 (29%), Positives = 11/24 (45%)
 Frame = +2

Query: 644 HVCWHFRHQSEESPVLTAMCNYHC 715
           H+ +H R+     P     C+Y C
Sbjct: 3   HLEYHLRNHFGSKPFKCEKCSYSC 26


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 210,717
Number of Sequences: 438
Number of extensions: 4528
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22048515
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)