Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11p22f
         (614 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    25   0.67 
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    25   0.67 
DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired pr...    23   2.7  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    23   2.7  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    23   2.7  
AF017415-2|AAB70263.1|  284|Tribolium castaneum abdominal-A prot...    22   3.6  
AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII pr...    22   3.6  
EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4 prot...    22   4.7  

>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
            variant 2 protein.
          Length = 1558

 Score = 24.6 bits (51), Expect = 0.67
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +2

Query: 59   INENKREKMGVATNALEIRPKGL 127
            I+ENK EK  +A   +E+R K +
Sbjct: 1247 IDENKEEKARIAKELIELRNKSV 1269


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase CHS1B
            protein.
          Length = 1558

 Score = 24.6 bits (51), Expect = 0.67
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +2

Query: 59   INENKREKMGVATNALEIRPKGL 127
            I+ENK EK  +A   +E+R K +
Sbjct: 1247 IDENKEEKARIAKELIELRNKSV 1269


>DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired
           protein.
          Length = 311

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 10/34 (29%), Positives = 16/34 (47%)
 Frame = +1

Query: 484 PLYAPSRQPVGTSGRERIAHHHCLRRWPIRYSDP 585
           P Y  ++Q    S R  ++ + C  + P  Y DP
Sbjct: 118 PYYRENKQGWQNSIRHNLSLNKCFVKVPRHYDDP 151


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
            variant 1 protein.
          Length = 1558

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +2

Query: 59   INENKREKMGVATNALEIRPKGL 127
            I+ENK EK  +A +  E+R + +
Sbjct: 1247 IDENKEEKARIAADLKELRDQSV 1269


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase CHS1A
            protein.
          Length = 1558

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +2

Query: 59   INENKREKMGVATNALEIRPKGL 127
            I+ENK EK  +A +  E+R + +
Sbjct: 1247 IDENKEEKARIAADLKELRDQSV 1269


>AF017415-2|AAB70263.1|  284|Tribolium castaneum abdominal-A
           protein.
          Length = 284

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 11/32 (34%), Positives = 13/32 (40%)
 Frame = +3

Query: 261 VCSPWSCPHFSGAT*YFRCQLVN*RESSAENH 356
           VC P  CP   G   Y R Q +   +    NH
Sbjct: 149 VCGPNGCPRRRGRQTYTRFQTLELEKEFHFNH 180


>AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII
           protein.
          Length = 343

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 11/32 (34%), Positives = 13/32 (40%)
 Frame = +3

Query: 261 VCSPWSCPHFSGAT*YFRCQLVN*RESSAENH 356
           VC P  CP   G   Y R Q +   +    NH
Sbjct: 208 VCGPNGCPRRRGRQTYTRFQTLELEKEFHFNH 239


>EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4
           protein.
          Length = 475

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +3

Query: 453 SSKASRRHSCTLVCTISSASGYLWKRKDCS 542
           S+KA    S  L  T+ + +GY+    DCS
Sbjct: 406 STKAPAPPSRDLTTTLCTKAGYVRDPDDCS 435


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,434
Number of Sequences: 336
Number of extensions: 3378
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15666150
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)