Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11p22f
         (614 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1683.12 |||nicotinic acid plasma membrane transporter |Schiz...    39   5e-04
SPBC1773.15 |||membrane transporter|Schizosaccharomyces pombe|ch...    35   0.011
SPBPB10D8.01 |||cysteine transporter |Schizosaccharomyces pombe|...    33   0.043
SPCC417.10 |||membrane transporter|Schizosaccharomyces pombe|chr...    32   0.057
SPBC27.03 |meu25||sequence orphan|Schizosaccharomyces pombe|chr ...    31   0.13 
SPAC1B3.16c |vht1||vitamin H transporter Vth1|Schizosaccharomyce...    27   2.2  
SPCPB1C11.03 |||cysteine transporter |Schizosaccharomyces pombe|...    26   5.0  
SPBC1778.10c |ppk21|SPBC4C3.11|serine/threonine protein kinase P...    25   6.6  
SPAC19B12.06c |||rhomboid family protease|Schizosaccharomyces po...    25   8.7  
SPCC24B10.16c |||sequence orphan|Schizosaccharomyces pombe|chr 3...    25   8.7  
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      25   8.7  

>SPBC1683.12 |||nicotinic acid plasma membrane transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 482

 Score = 39.1 bits (87), Expect = 5e-04
 Identities = 31/124 (25%), Positives = 60/124 (48%), Gaps = 1/124 (0%)
 Frame = +2

Query: 188 RVNI-SMAIVDMTDERKDEYFDWSHSVQSVVLSSFFWGYVILQVPAGELARKFGGKPLIT 364
           R NI + A+V + ++ K + + +S +V     S F+  Y+  + P+  L +KFG    ++
Sbjct: 59  RANIGNAAVVGLKEDLKLQAYQYSAAV-----SVFYATYITAETPSVLLVKKFGPHYYLS 113

Query: 365 ISVSVNALISLLLPTAAKIGDWKLVCVCRILQGFTQAFVYPCMHHLVSQWVPLEEKGLLT 544
             +   +L+++   T      W LV + R+L G  +   +PC+   +S     EE+G   
Sbjct: 114 AMIIGWSLVTIF--TCFVRHYWSLV-LTRLLLGICEGGFFPCLSLYISMTYKREEQGKRL 170

Query: 545 TIVY 556
             +Y
Sbjct: 171 AYLY 174


>SPBC1773.15 |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 497

 Score = 34.7 bits (76), Expect = 0.011
 Identities = 18/84 (21%), Positives = 38/84 (45%)
 Frame = +2

Query: 281 SSFFWGYVILQVPAGELARKFGGKPLITISVSVNALISLLLPTAAKIGDWKLVCVCRILQ 460
           +SF+ G+++  +P   L +KF   PL  ++ +      +L+     +  +      R L 
Sbjct: 94  TSFYLGFMVFSLPLSTLLQKF---PLSKVTSAFIVAWGILMTLTCLVHSYASYIATRTLL 150

Query: 461 GFTQAFVYPCMHHLVSQWVPLEEK 532
           G  ++ + P     ++QW   EE+
Sbjct: 151 GILESVITPAFVLFIAQWYRKEEQ 174


>SPBPB10D8.01 |||cysteine transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 552

 Score = 32.7 bits (71), Expect = 0.043
 Identities = 22/90 (24%), Positives = 41/90 (45%)
 Frame = +2

Query: 287 FFWGYVILQVPAGELARKFGGKPLITISVSVNALISLLLPTAAKIGDWKLVCVCRILQGF 466
           F+ G+VI Q+P   L ++F     +  S ++  +I + L  AA   ++  +   R   G 
Sbjct: 133 FYVGFVIGQIPGHMLLQRFPVSKFVAASTALWTII-IFLHCAAY--NFSGLMALRFFLGL 189

Query: 467 TQAFVYPCMHHLVSQWVPLEEKGLLTTIVY 556
            ++ + P M   +  + P  E+ LL    Y
Sbjct: 190 VESSLLPTMEATIGMFFPHSEQALLQPFFY 219


>SPCC417.10 |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 508

 Score = 32.3 bits (70), Expect = 0.057
 Identities = 22/90 (24%), Positives = 44/90 (48%)
 Frame = +2

Query: 281 SSFFWGYVILQVPAGELARKFGGKPLITISVSVNALISLLLPTAAKIGDWKLVCVCRILQ 460
           ++F+ GY++ + PA  L ++F   PL + ++ V  +I   L     + ++      R+L 
Sbjct: 107 TAFYLGYLVFEFPASLLLQRF---PL-SKTLCVFLVIWGFLLCMTSVANYPGFIALRVLL 162

Query: 461 GFTQAFVYPCMHHLVSQWVPLEEKGLLTTI 550
           G  ++   P    L +QW    E+ L T++
Sbjct: 163 GMMESAASPGFILLTAQWYKRSEQQLRTSV 192


>SPBC27.03 |meu25||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 622

 Score = 31.1 bits (67), Expect = 0.13
 Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 3/35 (8%)
 Frame = -3

Query: 423 PILAAVGRSNEINA---LTDTEMVINGFPPNFLAS 328
           P+L  +G S E+N+   LTD E   +G+ P FL S
Sbjct: 112 PLLKVIGSSEEVNSNLVLTDLETNTDGYDPKFLIS 146


>SPAC1B3.16c |vht1||vitamin H transporter Vth1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 568

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 15/80 (18%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
 Frame = +2

Query: 278 LSSFFWGYVILQVPAGELARKFGGKPLIT-ISVSVNALISLLLPTAAKIGDWKLVCVCRI 454
           L+ F+ GY+I +VP+  +      +  ++ I +++  + +       K G+ +     R 
Sbjct: 133 LALFYVGYIIFEVPSNLMMAFIEPRIWVSRIQLTIGVVGACHAVLGTKHGNAQSYVALRF 192

Query: 455 LQGFTQAFVYPCMHHLVSQW 514
             G  ++ ++P + + +S+W
Sbjct: 193 FLGVAESGLWPGLAYYMSRW 212


>SPCPB1C11.03 |||cysteine transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 570

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 25/93 (26%), Positives = 41/93 (44%), Gaps = 3/93 (3%)
 Frame = +2

Query: 287 FFWGYVILQVPAGELARKFG-GK--PLITISVSVNALISLLLPTAAKIGDWKLVCVCRIL 457
           F+ GY++ Q P   + + F  GK   L+T S SV   I  L   A   G    +   R  
Sbjct: 146 FYVGYIVGQFPGHYIMQTFPLGKFVGLVTFSWSV---IVFLHCCAYNYGG---LIALRFF 199

Query: 458 QGFTQAFVYPCMHHLVSQWVPLEEKGLLTTIVY 556
            GFT++ + P M   +  +   +E+  L  + +
Sbjct: 200 LGFTESCLLPAMEATMGMFFTHQEQAFLQPVFW 232


>SPBC1778.10c |ppk21|SPBC4C3.11|serine/threonine protein kinase
           Ppk21|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 550

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +1

Query: 124 PRHPSCPDYTTFPGDAGG 177
           P++ + PDYTTFP    G
Sbjct: 205 PKYVNSPDYTTFPSSFVG 222


>SPAC19B12.06c |||rhomboid family protease|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 258

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +1

Query: 268 VRGLVLIFLGLRDTSGASW*TSEKVRRKTIN 360
           + G+V IFL + D  G SW     +R  T+N
Sbjct: 37  ILGIVNIFLPIVDFFGLSWHNLINIRLHTLN 67


>SPCC24B10.16c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 110

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +2

Query: 281 SSFFWGYVILQVPAGELARKFGGK 352
           S F WG  +   PAG+LA    GK
Sbjct: 17  SIFVWGSNVSTCPAGDLALSMPGK 40


>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -1

Query: 86  PFFLFYFHLFIYNFFLMHILQSLAFS 9
           PFF F+F+  +++FF   +  SL F+
Sbjct: 106 PFFCFFFYFSLFSFF-SFLFTSLHFN 130


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,585,202
Number of Sequences: 5004
Number of extensions: 53800
Number of successful extensions: 177
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)